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fr.univnantes.termsuite.uima.readers.JsonCasDeserializer Maven / Gradle / Ivy
/*******************************************************************************
* Copyright 2015-2016 - CNRS (Centre National de Recherche Scientifique)
*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*
*******************************************************************************/
package fr.univnantes.termsuite.uima.readers;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_BEGIN;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_CASE;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_CATEGORY;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_CORPUS_SIZE;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_CUMULATED_DOCUMENT_SIZE;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_DEGREE;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_DOCUMENT_INDEX;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_DOCUMENT_SIZE;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_END;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_FORMATION;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_GENDER;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_LABELS;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_LAST_SEGMENT;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_LEMMA;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_MOOD;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_NB_DOCUMENTS;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_NUMBER;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_OFFSET_IN_SOURCE;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_PATTERN;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_PERSON;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_REGEX_LABEL;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_SPOTTING_RULE_NAME;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_STEM;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_SUB_CATEGORY;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_TAG;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_TENSE;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_TERM_KEY;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_URI;
import static fr.univnantes.termsuite.uima.readers.JsonCasConstants.F_WORDS;
import java.io.IOException;
import java.io.InputStream;
import java.nio.charset.Charset;
import java.util.List;
import java.util.Objects;
import org.apache.uima.cas.CAS;
import org.apache.uima.cas.CASException;
import org.apache.uima.fit.util.JCasUtil;
import org.apache.uima.jcas.cas.FSArray;
import org.apache.uima.jcas.cas.StringArray;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.core.JsonFactory;
import com.fasterxml.jackson.core.JsonParser;
import com.fasterxml.jackson.core.JsonToken;
import com.google.common.base.Preconditions;
import fr.univnantes.termsuite.types.FixedExpression;
import fr.univnantes.termsuite.types.SourceDocumentInformation;
import fr.univnantes.termsuite.types.TermOccAnnotation;
import fr.univnantes.termsuite.types.WordAnnotation;
/**
* Created by smeoni on 27/05/16.
*/
public class JsonCasDeserializer {
private static final Logger logger = LoggerFactory.getLogger(JsonCasDeserializer.class);
private static JsonParser parser;
private static JsonToken token;
public static void deserialize(InputStream inputStream, CAS cas) {
deserialize(inputStream, cas, Charset.defaultCharset().name());
}
public static void deserialize(InputStream inputStream, CAS cas, String encoding) {
Preconditions.checkNotNull(inputStream, "Paramater input stream is null");
Preconditions.checkNotNull(inputStream, "Paramater CAS is null");
try {
JsonFactory factory = new JsonFactory();
parser = factory.createParser(inputStream);
SourceDocumentInformation sdi = (SourceDocumentInformation) cas.createAnnotation(cas.getJCas().getCasType(SourceDocumentInformation.type), 0, 0);
WordAnnotation wa = (WordAnnotation) cas.createAnnotation(cas.getJCas().getCasType(WordAnnotation.type), 0, 0);
TermOccAnnotation toa = (TermOccAnnotation) cas.createAnnotation(cas.getJCas().getCasType(TermOccAnnotation.type), 0, 0);
FixedExpression fe = (FixedExpression) cas.createAnnotation(cas.getJCas().getCasType(FixedExpression.type), 0, 0);
boolean inSdi = false;
boolean inWa = false;
boolean inToa = false;
boolean inFe = false;
boolean inCoveredText = false;
while ((token=parser.nextToken()) != null)
{
if (inSdi){
if (token == JsonToken.END_OBJECT) {
inSdi = false;
}
else {
fillSdi(parser,token,sdi);
}
}
else if (inWa){
if (token == JsonToken.END_ARRAY) {
inWa = false;
}
else if (token == JsonToken.END_OBJECT) {
wa.addToIndexes();
wa = (WordAnnotation) cas.createAnnotation(cas.getJCas().getCasType(WordAnnotation.type), 0, 0);
}
fillWordAnnotations(parser, token, wa);
}
else if (inToa){
if (token == JsonToken.END_ARRAY
&& Objects.equals(parser.getParsingContext().getCurrentName(), "term_occ_annotations")) {
inToa = false;
}
else if (token == JsonToken.END_OBJECT) {
toa.addToIndexes();
toa = (TermOccAnnotation) cas.createAnnotation(cas.getJCas().getCasType(TermOccAnnotation.type), 0, 0);
}
FillTermOccAnnotations(parser, token, toa, cas);
}
else if (inFe){
if (token == JsonToken.END_ARRAY
&& Objects.equals(parser.getParsingContext().getCurrentName(), "fixed_expressions")) {
inFe = false;
}
else if (token == JsonToken.END_OBJECT) {
fe.addToIndexes();
fe = (FixedExpression) cas.createAnnotation(cas.getJCas().getCasType(FixedExpression.type), 0, 0);
}
FillFixedExpressions(parser, token, fe, cas);
}
else if (inCoveredText){
if (token == JsonToken.VALUE_STRING) {
String text = parser.getText();
cas.setDocumentText(text);
}
}
else if ("sdi".equals(parser.getParsingContext().getCurrentName())) {
inSdi = true;
}
else if ("word_annotations".equals(parser.getParsingContext().getCurrentName())) {
inWa = true;
}
else if ("term_occ_annotations".equals(parser.getParsingContext().getCurrentName())) {
inToa = true;
}
else if ("fixed_expressions".equals(parser.getParsingContext().getCurrentName())) {
inFe = true;
}
else if ("covered_text".equals(parser.getParsingContext().getCurrentName())) {
inCoveredText = true;
}
}
sdi.addToIndexes();
} catch (IOException | CASException e) {
logger.error("An error occurred during TermSuite Json Cas parsing", e);
}
}
private static void FillFixedExpressions(JsonParser parser, JsonToken token, FixedExpression fe, CAS cas) throws IOException {
if (token.equals(JsonToken.FIELD_NAME)){
switch (parser.getCurrentName()){
case F_BEGIN :
fe.setBegin(parser.nextIntValue(0));
break;
case F_END :
fe.setEnd(parser.nextIntValue(0));
break;
}
}
}
private static void fillWords(TermOccAnnotation toa, CAS cas) throws CASException, IOException {
FSArray fs = (FSArray) cas.createArrayFS(toa.getPattern().size());
int i = 0;
int begin = -1;
int end = -1;
while(i != toa.getPattern().size()){
if (begin != -1 && token == JsonToken.VALUE_NUMBER_INT){
end = parser.getValueAsInt();
}
else if (token == JsonToken.VALUE_NUMBER_INT){
begin = parser.getValueAsInt();
}
else if (end != -1){
List wa = JCasUtil.selectCovered(cas.getJCas(),WordAnnotation.class,begin,end);
fs.set(i,wa.get(0));
begin = -1;
end = -1;
i++;
}
token = parser.nextToken();
}
toa.setWords(fs);
}
private static void fillWordAnnotations(JsonParser parser, JsonToken token, WordAnnotation wa) throws IOException {
if (token.equals(JsonToken.FIELD_NAME)){
switch (parser.getCurrentName()){
case F_CATEGORY :
wa.setCategory(parser.nextTextValue());
break;
case F_LEMMA :
wa.setLemma(parser.nextTextValue());
break;
case F_STEM :
wa.setStem(parser.nextTextValue());
break;
case F_TAG :
wa.setTag(parser.nextTextValue());
break;
case F_SUB_CATEGORY :
wa.setSubCategory(parser.nextTextValue());
break;
case F_REGEX_LABEL :
wa.setRegexLabel(parser.nextTextValue());
break;
case F_NUMBER :
wa.setNumber(parser.nextTextValue());
break;
case F_GENDER :
wa.setGender(parser.nextTextValue());
break;
case F_CASE :
wa.setCase(parser.nextTextValue());
break;
case F_MOOD :
wa.setMood(parser.nextTextValue());
break;
case F_TENSE :
wa.setTense(parser.nextTextValue());
break;
case F_PERSON :
wa.setPerson(parser.nextTextValue());
break;
case F_DEGREE :
wa.setDegree(parser.nextTextValue());
break;
case F_FORMATION :
wa.setFormation(parser.nextTextValue());
break;
case F_LABELS :
wa.setLabels(parser.nextTextValue());
break;
case F_BEGIN :
wa.setBegin(parser.nextIntValue(0));
break;
case F_END :
wa.setEnd(parser.nextIntValue(0));
break;
}
}
}
private static void fillSdi(JsonParser parser , JsonToken token, SourceDocumentInformation sdi) throws IOException {
if (token.equals(JsonToken.FIELD_NAME)){
switch (parser.getCurrentName()){
case F_URI :
sdi.setUri(parser.nextTextValue());
break;
case F_OFFSET_IN_SOURCE :
sdi.setOffsetInSource(parser.nextIntValue(0));
break;
case F_DOCUMENT_INDEX :
sdi.setDocumentIndex(parser.nextIntValue(0));
break;
case F_NB_DOCUMENTS :
sdi.setNbDocuments(parser.nextIntValue(0));
break;
case F_DOCUMENT_SIZE :
sdi.setDocumentSize(parser.nextIntValue(0));
break;
case F_CUMULATED_DOCUMENT_SIZE :
sdi.setCumulatedDocumentSize(parser.nextLongValue(0));
break;
case F_CORPUS_SIZE :
sdi.setCorpusSize(parser.nextLongValue(0));
break;
case F_LAST_SEGMENT :
sdi.setLastSegment(parser.nextBooleanValue());
break;
case F_BEGIN :
sdi.setBegin(parser.nextIntValue(0));
break;
case F_END :
sdi.setEnd(parser.nextIntValue(0));
break;
}
}
}
private static void FillTermOccAnnotations(JsonParser parser , JsonToken token, TermOccAnnotation toa, CAS cas) throws IOException, CASException {
if (token.equals(JsonToken.FIELD_NAME)){
switch (parser.getCurrentName()){
case F_PATTERN :
String[] patternTable = parser.nextTextValue().split(" ");
StringArray stringArray = new StringArray(cas.getJCas(), patternTable.length);
for (int i = 0; i < patternTable.length; i++){
stringArray.set(i,patternTable[i]);
}
toa.setPattern(stringArray);
break;
case F_SPOTTING_RULE_NAME :
toa.setSpottingRuleName(parser.nextTextValue());
break;
case F_TERM_KEY :
toa.setTermKey(parser.nextTextValue());
break;
case F_WORDS :
fillWords(toa,cas);
break;
case F_BEGIN :
toa.setBegin(parser.nextIntValue(0));
break;
case F_END :
toa.setEnd(parser.nextIntValue(0));
break;
}
}
}
}
