nom.tam.fits.compress.CompressionManager Maven / Gradle / Ivy
package nom.tam.fits.compress;
import java.io.BufferedInputStream;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.ServiceLoader;
import java.util.logging.Level;
import java.util.logging.Logger;
import nom.tam.fits.FitsException;
/*
* #%L
* nom.tam FITS library
* %%
* Copyright (C) 1996 - 2024 nom-tam-fits
* %%
* This is free and unencumbered software released into the public domain.
*
* Anyone is free to copy, modify, publish, use, compile, sell, or
* distribute this software, either in source code form or as a compiled
* binary, for any purpose, commercial or non-commercial, and by any
* means.
*
* In jurisdictions that recognize copyright laws, the author or authors
* of this software dedicate any and all copyright interest in the
* software to the public domain. We make this dedication for the benefit
* of the public at large and to the detriment of our heirs and
* successors. We intend this dedication to be an overt act of
* relinquishment in perpetuity of all present and future rights to this
* software under copyright law.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
* MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
* IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR
* OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
* ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
* #L%
*/
import static nom.tam.util.LoggerHelper.getLogger;
/**
* (for internal use) Decompression of compressed FITS files of all supported types (.gz
,
* .Z
, .bz2
). It autodetects the type of compression used based on the first 2-bytes of the
* compressed input stream. When possible, preference will be given to perform the decompression using a system command
* (uncompress
or bzip2
, which are likely faster for large files). If such a tool is not
* available, then the Apache common-compress classes will be used to the same effect.
*
* @see GZipCompressionProvider
* @see BZip2CompressionProvider
* @see ZCompressionProvider
*/
public final class CompressionManager {
private static final String BZIP2_EXTENTION = ".bz2";
private static final String COMPRESS_EXTENTION = ".Z";
private static final String GZIP_EXTENTION = ".gz";
/** bytes in a megabyte (MB) */
public static final int ONE_MEGABYTE = 1024 * 1024;
/**
* logger to log to.
*/
private static final Logger LOG = getLogger(CompressionManager.class);
private CompressionManager() {
}
/**
* This method decompresses a compressed input stream. The decompression method is selected automatically based upon
* the first two bytes read.
*
* @param compressed The compressed input stream
*
* @return A stream which wraps the input stream and decompresses it. If the input stream is not
* compressed, a pushback input stream wrapping the original stream is returned.
*
* @throws FitsException when the stream could not be read or decompressed
*/
public static InputStream decompress(InputStream compressed) throws FitsException {
BufferedInputStream pb = new BufferedInputStream(compressed, ONE_MEGABYTE);
pb.mark(2);
int mag1 = -1;
int mag2 = -1;
try {
mag1 = pb.read();
mag2 = pb.read();
// Push the data back into the stream
pb.reset();
ICompressProvider selectedProvider = selectCompressionProvider(mag1, mag2);
if (selectedProvider != null) {
return selectedProvider.decompress(pb);
}
return pb;
} catch (IOException e) {
// This is probably a prelude to failure...
throw new FitsException("Unable to analyze input stream", e);
}
}
/**
* Is a file compressed? (the magic number in the first 2 bytes is used to detect the compression.
*
* @param file file to test for compression algorithms
*
* @return true if the file is compressed
*/
public static boolean isCompressed(File file) {
if (!file.exists()) {
return false;
}
try (InputStream fis = new FileInputStream(file)) {
int mag1 = fis.read();
int mag2 = fis.read();
fis.close();
return selectCompressionProvider(mag1, mag2) != null;
} catch (IOException e) {
LOG.log(Level.FINEST, "Error while checking if file " + file + " is compressed", e);
}
return false;
}
/**
*
* Checks if a file is compressed. If the file by the name exists, it will check the magic number in the first
* 2-bytes to see if they matched those of the supported compression algorithms. Otherwise it checks if the file
* extension atches one of the standard extensions for supported compressed files (.gz
,
* .Z
, or .bz2
).
*
*
* As of 1.18, all file extension are checked in a case insensitive manner
*
*
* @param filename of the file to test for compression algorithms
*
* @return true if the file is compressed
*/
public static boolean isCompressed(String filename) {
if (filename == null) {
return false;
}
File test = new File(filename);
if (test.exists()) {
return isCompressed(test);
}
int iExt = filename.lastIndexOf('.');
if (iExt < 0) {
return false;
}
String ext = filename.substring(iExt);
return ext.equalsIgnoreCase(GZIP_EXTENTION) || ext.equalsIgnoreCase(COMPRESS_EXTENTION)
|| ext.equalsIgnoreCase(BZIP2_EXTENTION);
}
private static ICompressProvider selectCompressionProvider(int mag1, int mag2) {
return nextCompressionProvider(mag1, mag2, null);
}
/**
* Returned the next highest priority decompression class, after the one we don't want, for the given type of
* compressed file.
*
* @param mag1 the first magic byte at the head of the compressed file
* @param mag2 the second magic byte at the head of the compressed file
* @param old the last decompression class we tried for this type of file
*
* @return the next lower priority decompression class we might use.
*/
protected static ICompressProvider nextCompressionProvider(int mag1, int mag2, ICompressProvider old) {
ICompressProvider selectedProvider = null;
int priority = 0;
int maxPriority = Integer.MAX_VALUE;
if (old != null) {
maxPriority = old.priority();
}
ServiceLoader compressionProviders = ServiceLoader.load(ICompressProvider.class,
Thread.currentThread().getContextClassLoader());
for (ICompressProvider provider : compressionProviders) {
if (provider.priority() > Math.max(0, priority) && provider.priority() < maxPriority && provider != old && //
provider.provides(mag1, mag2)) {
priority = provider.priority();
selectedProvider = provider;
}
}
return selectedProvider;
}
}