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MolWitch implementation that uses CDK as the underlying cheminformatics framework.
/*
* NCATS-MOLWITCH-CDK
*
* Copyright (c) 2023.
*
* This work is free software; you can redistribute it and/or modify it under the terms of the
* GNU Lesser General Public License as published by the Free Software Foundation;
* either version 2.1 of the License, or (at your option) any later version.
*
* This work is distributed in the hope that it will be useful, but without any warranty;
* without even the implied warranty of merchantability or fitness for a particular purpose.
* See the GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License along with this library;
* if not, write to:
*
* the Free Software Foundation, Inc.
* 59 Temple Place, Suite 330
* Boston, MA 02111-1307 USA
*/
package gov.nih.ncats.molwitch.cdk.writer;
import java.io.Closeable;
import java.io.IOException;
import java.io.OutputStream;
import java.io.Writer;
import java.util.Collection;
import java.util.function.Function;
import org.openscience.cdk.exception.CDKException;
import org.openscience.cdk.interfaces.IChemObject;
import org.openscience.cdk.io.IChemObjectWriter;
import org.openscience.cdk.io.formats.IResourceFormat;
import org.openscience.cdk.io.listener.IChemObjectIOListener;
import org.openscience.cdk.io.setting.IOSetting;
public class ChemObjectWriterAdapter implements IChemObjectWriter, Closeable{
private final IChemObjectWriter delegate;
private final Function adapter;
public static ChemObjectWriterAdapter create(IChemObjectWriter delegate, Function adapter){
return new ChemObjectWriterAdapter<>(delegate, adapter);
}
private ChemObjectWriterAdapter(IChemObjectWriter delegate, Function adapter) {
this.delegate = delegate;
this.adapter = adapter;
}
@Override
public IResourceFormat getFormat() {
return delegate.getFormat();
}
@Override
public boolean accepts(Class extends IChemObject> classObject) {
return delegate.accepts(classObject);
}
@Override
public void close() throws IOException {
delegate.close();
}
@Override
public IOSetting[] getIOSettings() {
return delegate.getIOSettings();
}
@Override
public void addChemObjectIOListener(IChemObjectIOListener listener) {
delegate.addChemObjectIOListener(listener);
}
@Override
public void removeChemObjectIOListener(IChemObjectIOListener listener) {
delegate.removeChemObjectIOListener(listener);
}
@Override
public Collection getListeners() {
return delegate.getListeners();
}
@Override
public S addSetting(IOSetting setting) {
return delegate.addSetting(setting);
}
@Override
public void addSettings(Collection settings) {
delegate.addSettings(settings);
}
@Override
public boolean hasSetting(String name) {
return delegate.hasSetting(name);
}
@Override
public S getSetting(String name) {
return delegate.getSetting(name);
}
@Override
public S getSetting(String name, Class c) {
return delegate.getSetting(name, c);
}
@Override
public Collection getSettings() {
return delegate.getSettings();
}
@SuppressWarnings("unchecked")
@Override
public void write(IChemObject object) throws CDKException {
delegate.write(adapter.apply((T)object));
}
@Override
public void setWriter(Writer writer) throws CDKException {
delegate.setWriter(writer);
}
@Override
public void setWriter(OutputStream writer) throws CDKException {
delegate.setWriter(writer);
}
}
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