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A single jar with all the Cognitive Foundry components.
/*
* File: Matrix.java
* Authors: Kevin R. Dixon
* Company: Sandia National Laboratories
* Project: Cognitive Foundry
*
* Copyright April 12, 2006, Sandia Corporation. Under the terms of Contract
* DE-AC04-94AL85000, there is a non-exclusive license for use of this work by
* or on behalf of the U.S. Government. Export of this program may require a
* license from the United States Government. See CopyrightHistory.txt for
* complete details.
*
*/
package gov.sandia.cognition.math.matrix;
import gov.sandia.cognition.annotation.CodeReview;
import gov.sandia.cognition.annotation.CodeReviews;
import gov.sandia.cognition.math.ComplexNumber;
import gov.sandia.cognition.math.Ring;
import java.text.NumberFormat;
import java.util.List;
/**
* Defines the base functionality for all implementations of a Matrix
*
* @author Kevin R. Dixon
* @since 1.0
*/
@CodeReviews(
reviews={
@CodeReview(
reviewer="Kevin R. Dixon",
date="2008-02-26",
changesNeeded=false,
comments={
"Minor changes to the formatting",
"Otherwise, looks good."
}
),
@CodeReview(
reviewer="Jonathan McClain",
date="2006-05-16",
changesNeeded=false,
comments="Interface looks ok. Made a few minor changes."
)
}
)
public interface Matrix
extends java.lang.Iterable, Ring, Vectorizable
{
public Matrix clone();
/**
* Returns the number of rows in the Matrix
*
* @return Number of rows in the Matrix
*/
public int getNumRows();
/**
* Returns the number of columns in the Matrix
*
* @return Number of columns in the Matrix
*/
public int getNumColumns();
/**
* Gets the value of the element of the matrix at the zero-based row and
* column indices. It throws an ArrayIndexOutOfBoundsException if either
* index is out of range.
* It is a convenience method for {@code getElement}.
*
* @param rowIndex
* The zero-based row index. Must be between 0 (inclusive) and the
* number of rows (exclusive).
* @param columnIndex
* The zero-based column index. Must be between 0 (inclusive) and the
* number of columns (exclusive).
* @return
* The value at the given row and column in the matrix.
* @since 3.4.0
*/
public double get(
final int rowIndex,
final int columnIndex);
/**
* Sets the value of the element of the matrix at the zero-based row and
* column indices. It throws an ArrayIndexOutOfBoundsException if either
* index is out of range.
* It is a convenience method for {@code setElement}.
*
* @param rowIndex
* The zero-based row index. Must be between 0 (inclusive) and the
* number of rows (exclusive).
* @param columnIndex
* The zero-based column index. Must be between 0 (inclusive) and the
* number of columns (exclusive).
* @param value
* The value to set at the given row and column in the matrix.
* @since 3.4.0
*/
public void set(
final int rowIndex,
final int columnIndex,
final double value);
/**
* Gets the Matrix element at the specified zero-based indices
* throws ArrayIndexOutOfBoundsException if either rowIndex or columnIndex
* are less than 0, or greater than the number of rows (columns) minus one
* (0 <= index <= num-1)
*
* @param rowIndex Zero-based index into the Matrix
* @param columnIndex Zero-based index into the Matrix
* @return The value at rowIndex, columnIndex
*/
public double getElement(
int rowIndex,
int columnIndex );
/**
* Sets the Matrix element at the specified zero-based indices
* throws ArrayIndexOutOfBoundsException if either rowIndex or columnIndex
* are less than 0, or greater than the number of rows (columns) minus one
* (0 <= index <= num-1)
*
* @param rowIndex Zero-based index into the rows of the Matrix
* @param columnIndex Zero-based index into the columns of the Matrix
* @param value Value to set at the specified index
*/
public void setElement(
int rowIndex,
int columnIndex,
double value );
/**
* Gets the embedded submatrix inside of the Matrix, specified by the
* inclusive, zero-based indices such that the result matrix will have size
* (maxRow-minRow+1) x (maxColum-minCcolumn+1)
*
*
* @param minRow Zero-based index into the rows of the Matrix, must be less
* than or equal to maxRow
* @param maxRow Zero-based index into the rows of the Matrix, must be
* greater than or equal to minRow
* @param minColumn Zero-based index into the rows of the Matrix, must be
* less than or equal to maxColumn
* @param maxColumn Zero-based index into the rows of the Matrix, must be
* greater than or equal to minColumn
* @return the Matrix of dimension (maxRow-minRow+1)x(maxColumn-minColumn+1)
*/
public Matrix getSubMatrix(
int minRow,
int maxRow,
int minColumn,
int maxColumn );
/**
* Sets the submatrix inside of the Matrix, specified by the zero-based
* indices.
*
* @param minRow Zero-based index into the rows of the Matrix, must be less
* than or equal to maxRow
* @param minColumn Zero-based index into the rows of the Matrix, must be
* less than or equal to maxColumn
* @param submatrix Matrix containing the values to set at the specified
* indices
*/
public void setSubMatrix(
int minRow,
int minColumn,
Matrix submatrix );
/**
* Determines if the matrix is symmetric.
*
* @return true if the matrix is symmetric, false otherwise
*/
public boolean isSymmetric();
/**
* Determines if the matrix is effectively symmetric
*
* @param effectiveZero
* tolerance to determine symmetry
* @return true if effectively symmetric, false otherwise
*/
public boolean isSymmetric(
double effectiveZero );
/**
* Checks to see if the dimensions are the same between this
* and otherMatrix
*
* @param otherMatrix
* matrix against which to check
* @return true if
* this.getNumRows() == otherMatrix.getNumRows() and
* this.getNumColumns() == otherMatrix.getNumColumns()
*/
public boolean checkSameDimensions(
Matrix otherMatrix );
/**
* Throws a DimensionalityMismatchException if dimensions between this
* and otherMatrix aren't the same
*
* @param otherMatrix
* Matrix dimensions to compare to this
*/
public void assertSameDimensions(
Matrix otherMatrix );
/**
* Checks to see if the dimensions are appropriate for:
* this.times( postMultiplicationMatrix )
*
* @param postMultiplicationMatrix
* matrix by which this is to be multiplied
* @return true if this.getNumColumns() ==
* postMultlicationMatrix.getNumColumns(), false otherwise
*/
public boolean checkMultiplicationDimensions(
Matrix postMultiplicationMatrix );
/**
* Matrix multiplication of this and matrix,
* operates like the "*" operator in Matlab
*
* @param matrix this.getNumColumns()==matrix.getNumRows()
* @return Matrix multiplication of this and
* matrix, will this.getNumRows() rows and
* matrix.getNumColumns() columns
*/
public Matrix times(
final Matrix matrix );
/**
* Returns the transpose of this
*
* @return Matrix whose elements are equivalent to:
* this.getElement(i, j) == this.transpose().getElement(j, i)
* for any valid i, j.
*/
public Matrix transpose();
/**
* Computes the full-blown inverse of this, which must be a
* square matrix
*
* @return Inverse of this, such that
* this.times(this.inverse()) == this.inverse().times(this)
* == identity matrix
*/
public Matrix inverse();
/**
* Computes the effective pseudo-inverse of this, using a
* rather expensive procedure (SVD)
*
* @return full singular-value pseudo-inverse of this
*/
public Matrix pseudoInverse();
/**
* Computes the effective pseudo-inverse of this, using a
* rather expensive procedure (SVD)
*
* @param effectiveZero
* effective zero to pass along to the SVD
*
* @return effective pseudo-inverse of this
*/
public Matrix pseudoInverse(
double effectiveZero );
/**
* Element-wise division of {@code this} by {@code other}. Note that if
* {@code other} has zero elements the result will contain {@code NaN}
* values.
*
* @param other
* The other ring whose elements will divide into this one.
* @return
* A new ring of equal size whose elements are equal to the
* corresponding element in {@code this} divided by the element in
* {@code other}.
*/
public Matrix dotDivide(
final Matrix other);
/**
* Inline element-wise division of {@code this} by {@code other}. Note
* that if {@code other} has zero elements this will contain {@code NaN}
* values.
*
* @param other
* The other vector whose elements will divide into this one.
*/
public void dotDivideEquals(
final Matrix other);
/**
* Computes the natural logarithm of the determinant of this.
* Very computationally intensive. Please THINK LONG AND HARD before
* invoking this method on sparse matrices, as they have to be converted
* to a DenseMatrix first.
*
* @return natural logarithm of the determinant of this
*/
public ComplexNumber logDeterminant();
/**
* Computes the trace of this, which is the sum of the diagonal
* elements. It is equivalent to the sum of the eigenvalues (which
* is probably the most interesting result in all of algebra!).
*
* @return trace of this
*/
public double trace();
/**
* Computes the rank of this, which is the number of
* linearly independent rows and columns in this. Rank is
* typically based on the SVD, which is a fairly computationally expensive
* procedure and should be used carefully
*
* @return rank of this, equivalent to the number of linearly
* independent rows and columns in this
*/
public int rank();
/**
* Computes the effective rank of this, which is the number of
* linearly independent rows and columns in this. Rank is
* typically based on the SVD, which is a fairly computationally expensive
* procedure and should be used carefully
*
* @param effectiveZero
* parameter to pass along to SVD to determine linear dependence
*
* @return rank of this, equivalent to the number of linearly
* indepenedent rows and columns in this
*/
public int rank(
double effectiveZero );
/**
* Compute the Frobenius norm of this, which is just a fancy
* way of saying that I will square each element, add those up, and square
* root the result. This is probably the most intuitive of the matrix norms
*
* @return Frobenius norm of this
*/
public double normFrobenius();
/**
* Compute the squared Frobenius norm of this, which is just a
* fancy way of saying that I will square each element and add those up.
*
* @return Frobenius norm of this
*/
public double normFrobeniusSquared();
/**
* Determines if the matrix is square (numRows == numColumns)
*
* @return true if square, false if nonsquare
*/
public boolean isSquare();
/**
* Solves for "X" in the equation: this*X = B
*
* @param B Must satisfy this.getNumColumns() == B.getNumRows();
* @return X Matrix with dimensions (this.getNumColumns() x B.getNumColumns())
*/
public Matrix solve(
final Matrix B );
/**
* Solves for "x" in the equation: this*x = b
*
* @param b must satisfy this.getNumColumns() == b.getDimensionality()
* @return x Vector with dimensions (this.getNumColumns())
*/
public Vector solve(
final Vector b );
/**
* Formats the matrix as an identity matrix. This does not have to be
* square.
*/
public void identity();
/**
* Returns the column vector from the equation
* return = this * vector
*
* @param vector
* Vector by which to post-multiply this, must have the
* same number of rows as this
* @return Vector with the same dimensionality as the number of rows as
* this and vector
*/
public Vector times(
final Vector vector );
/**
* Returns true if this matrix has a potentially sparse underlying
* structure. This can indicate that it is faster to only process the
* non-zero elements rather than to do dense operations on it. Of course,
* even with a sparse structure, there may be no zero elements or
* conversely even with a non-sparse (dense) structure there may be many
* zero elements.
*
* @return
* True if the matrix has a potentially sparse structure. Otherwise,
* false.
*/
public boolean isSparse();
/**
* Gets the specified column from the zero-based index and returns a
* vector that corresponds to that column.
*
* @param columnIndex
* zero-based index into the matrix
* @return Vector with elements equal to the number of rows in this
*/
public Vector getColumn(
int columnIndex );
/**
* Gets the specified row from the zero-based index and returns a vector
* that corresponds to that column
*
* @param rowIndex
* zero-based index into the matrix
* @return Vector with elements equal to the number of columns in this
*/
public Vector getRow(
int rowIndex );
/**
* Sets the specified column from the given columnVector
*
* @param columnIndex
* zero-based index into the matrix
* @param columnVector
* vector to replace in this, must have same number of elements
* as this has rows
*/
public void setColumn(
int columnIndex,
Vector columnVector );
/**
* Sets the specified row from the given rowVector
*
* @param rowIndex
* zero-based index into the matrix
* @param rowVector
* vector to replace in this, must have the same number of elements
* as this has columns
*/
public void setRow(
int rowIndex,
Vector rowVector );
/**
* Returns a new vector containing the sum across the rows.
*
* @return
* A new vector containing the sum of the rows. Its dimensionality is
* equal to the number of columns.
* @since 3.0
*/
public Vector sumOfRows();
/**
* Returns a new vector containing the sum across the columns.
*
* @return
* A new vector containing the sum of the columns. Its dimensionality
* is equal to the number of rows.
* @since 3.0
*/
public Vector sumOfColumns();
/**
* Increments the value at the given position by 1.
*
* @param row
* The zero-based row index.
* @param column
* The zero-based column index.
*/
public void increment(
final int row,
final int column);
/**
* Increments the value at the given position by the given value.
*
* @param row
* The zero-based row index.
* @param column
* The zero-based column index.
* @param value
* The value to add.
*/
public void increment(
final int row,
final int column,
final double value);
/**
* Decrements the value at the given position by 1.
*
* @param row
* The zero-based row index.
* @param column
* The zero-based column index.
*/
public void decrement(
final int row,
final int column);
/**
* Decrements the value at the given position by the given value.
*
* @param row
* The zero-based row index.
* @param column
* The zero-based column index.
* @param value
* The value to subtract.
*/
public void decrement(
final int row,
final int column,
final double value);
/**
* uploads a matrix from a column-stacked vector of parameters, so that
* v(k) = A(i,j) = A( k%M, k/M )
*
* @param parameters column-stacked version of this
*/
public void convertFromVector(
Vector parameters );
/**
* Creates a column-stacked version of this, so that
* v(k) = A(i,j) = v(j*M+i)
*
* @return column-stacked Vector representing this
*/
public Vector convertToVector();
/**
* Converts this matrix to a new array of array of doubles, in the same
* order as they are in the matrix. The returned will be safe in that no
* references are maintained by this class.
*
* @return
* This matrix as a dense array. The length of the first layer of
* the array will be equal to the number of rows and the second
* layer will be equal to the number of columns.
*/
public double[][] toArray();
/**
* Returns a column-stacked view of this matrix as a list. This means that
* v(k) = A(i,j) = v(j*M+i).
*
* @return
* The values in this matrix as a column-stacked list.
*/
public List valuesAsList();
public String toString();
/**
* Converts the vector to a {@code String}, using the given formatter.
*
* @param format The number format to use.
* @return The String representation of the Matrix.
*/
public String toString(
final NumberFormat format);
}