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Implementation of various string similarity and distance algorithms: Levenshtein, Jaro-winkler, n-Gram, Q-Gram, Jaccard index, Longest Common Subsequence edit distance, cosine similarity...
/*
* The MIT License
*
* Copyright 2015 Thibault Debatty.
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
package info.debatty.java.stringsimilarity;
import info.debatty.java.stringsimilarity.interfaces.NormalizedStringSimilarity;
import info.debatty.java.stringsimilarity.interfaces.NormalizedStringDistance;
/**
* Similar to Jaccard index, but this time the similarity is computed as
* 2 * |V1 inter V2| / (|V1| + |V2|).
* Distance is computed as 1 - cosine similarity.
* @author Thibault Debatty
*/
public class SorensenDice extends ShingleBased implements
NormalizedStringDistance, NormalizedStringSimilarity {
/**
* @param args the command line arguments
*/
public static void main(String[] args) {
SorensenDice sd = new SorensenDice(2);
// AB BC CD DE DF FG
// 1 1 1 1 0 0
// 1 1 1 0 1 1
// => 2 x 3 / (4 + 5) = 6/9 = 0.6666
System.out.println(sd.similarity("ABCDE", "ABCDFG"));
}
/**
* Sorensen-Dice coefficient, aka Sørensen index, Dice's coefficient or
* Czekanowski's binary (non-quantitative) index.
*
* The strings are first converted to boolean sets of k-shingles (sequences
* of k characters), then the similarity is computed as
* 2 * |A inter B| / (|A| + |B|).
* Attention: Sorensen-Dice distance (and similarity) does not satisfy
* triangle inequality.
*
* @param k
*/
public SorensenDice(int k) {
super(k);
}
public SorensenDice() {
super(3);
}
public double similarity(String s1, String s2) {
KShingling ks = new KShingling(k);
int[] profile1 = ks.getArrayProfile(s1);
int[] profile2 = ks.getArrayProfile(s2);
int length = Math.max(profile1.length, profile2.length);
profile1 = java.util.Arrays.copyOf(profile1, length);
profile2 = java.util.Arrays.copyOf(profile2, length);
int inter = 0;
int sum = 0;
for (int i = 0; i < length; i++) {
if (profile1[i] > 0 && profile2[i] > 0) {
inter++;
}
if (profile1[i] > 0) {
sum++;
}
if (profile2[i] > 0) {
sum++;
}
}
return 2.0 * inter / sum;
}
public double distance(String s1, String s2) {
return 1 - similarity(s1, s2);
}
}