config.prodConfig.xml Maven / Gradle / Ivy
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE tetrad-configuration [
<!ELEMENT tetrad-configuration (session-node*)>
<!ELEMENT session-node (models, display-component, model-chooser, node-specific-message)>
<!ELEMENT models (model+)>
<!ELEMENT model (logger?, model-class, editor-class, params-editor-class?)>
<!ELEMENT params-editor-class (#PCDATA)>
<!ELEMENT logger (event+)>
<!ELEMENT event EMPTY>
<!ELEMENT model-class (#PCDATA)>
<!ELEMENT editor-class (#PCDATA)>
<!ELEMENT display-component (#PCDATA)>
<!ELEMENT model-chooser (#PCDATA)>
<!ELEMENT node-specific-message (#PCDATA)>
<!ATTLIST event id NMTOKENS #REQUIRED description CDATA #REQUIRED default (on|off) #IMPLIED>
<!ATTLIST display-component image NMTOKENS #IMPLIED>
<!ATTLIST model-chooser title NMTOKENS #REQUIRED>
<!ATTLIST session-node id ID #REQUIRED>
<!ATTLIST model name NMTOKENS #REQUIRED acronym NMTOKENS #REQUIRED help NMTOKENS #REQUIRED category NMTOKENS #IMPLIED>
]>
<tetrad-configuration>
<session-node id="Graph">
<models>
<model name="Graph" acronym="Graph" help="general_graph" category="Basic Graph Types">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.GraphWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
<model name="Directed Acyclic Graph" acronym="DAG" help="dag" category="Basic Graph Types">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.DagWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.DagEditor</editor-class>
</model>
<model name="Structural Equation Model Graph" acronym="SEM Graph"
help="sem_graph" category="Basic Graph Types">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.SemGraphWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.SemGraphEditor
</editor-class>
</model>
<model name="Time Lag Graph" acronym="Lag Graph" help="time_lag_graph" category="Basic Graph Types">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.TimeLagGraphWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.TimeLagGraphEditor
</editor-class>
</model>
<!--Graph manip-->
<model name="Display Subgraphs" acronym="Graph Select"
help="graph_selections" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="result" description="Result" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.GraphSelectionWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphSelectionEditor
</editor-class>
</model>
<model name="Choose Dag in CPDAG" acronym="Dag in CPDAG"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.DagFromCPDAGWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor</editor-class>
</model>
<model name="Choose Mag in PAG" acronym="Mag in PAG"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.MagInPagWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor</editor-class>
</model>
<model name="Show DAGs in CPDAG" acronym="Dags in CPDAG"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="selected_graph" description="Selected Graph" default="on"/>
<event id="all_graphs" description="All Graphs"/>
</logger>
<model-class>edu.cmu.tetradapp.model.ScoredGraphsWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.ScoredGraphsDisplay</editor-class>
</model>
<model name="Generate CPDAG from Dag" acronym="CPDAG from Dag"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="cpdag" description="CPDAG" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.CPDAGFromDagGraphWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
<model name="Generate PAG from Dag" acronym="PAG from Dag"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="pag" description="PAG" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.PagFromDagGraphWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
<model name="Generate PAG from tsDag" acronym="PAG from tsDag"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="pag" description="PAG" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.TsPagFromDagGraphWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
<model name="Make Bidirected Edges Undirected" acronym="Make bidirected undirected"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.BidirectedToUndirectedWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
<model name="Make Undirected Edges Bidirected" acronym="Make undirected bidirected"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.UndirectedToBidirectedWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
<model name="Make All Edges Undirected" acronym="Make all edges undirected"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.AllEdgesUndirectedWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
<model name="Remove Null Edges from Bootstrapping" acronym="Remove null edges"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.RemoveNullEdgesGraphWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
<model name="Generate Complete Graph" acronym="Generate complete graph"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.GenerateCompleteGraphWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
<model name="Extract Structure Model" acronym="Extract Struct Model"
help="graph" category="Graph Manipulations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.ExtractStructureModelWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphEditor
</editor-class>
</model>
</models>
<display-component image="graphIcon.gif"/>
<model-chooser title="Graphs and Graph Manipulations">
edu.cmu.tetradapp.app.CategorizingModelChooser
</model-chooser>
<!--<model-chooser title="Graph Types"/>-->
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) No inputs
<br> (2) Data (to extract variables)
<br> (3) Also (to extract a graph) any of these: Search, PM, IM, Estimator, Updator
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="PM">
<models>
<model name="Bayes Parametric Model" acronym="Bayes PM" help="bayes_pm">
<logger>
<event id="info" description="Information" default="on"/>
<event id="pm" description="Parametric Model" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.BayesPmWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.BayesPmEditor
</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.BayesPmParamsEditor
</params-editor-class>
</model>
<model name="SEM Parametric Model" acronym="SEM PM" help="sem_im">
<logger>
<event id="info" description="Information" default="on"/>
<event id="pm" description="Parametric Model" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.SemPmWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.SemPmEditor
</editor-class>
</model>
<model name="Generalized SEM Parametric Model" acronym="Gen. SEM PM" help="sem_im">
<logger>
<event id="info" description="Information" default="on"/>
<event id="pm" description="Parametric Model" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.GeneralizedSemPmWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.GeneralizedSemPmEditor
</editor-class>
</model>
</models>
<display-component image="pmIcon.gif"/>
<model-chooser title="Types of Parameterized Models"/>
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) Graph, OR
<br> (2) Graph AND Data (to extract discrete categories)
<br> (3) Also (to extract a PM) any of these: IM, Estimator
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="IM">
<models>
<model name="Bayes Instantiated Model" acronym="Bayes IM"
help="bayes_im">
<logger>
<event id="info" description="Information" default="on"/>
<event id="im" description="Instantiated Model" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.BayesImWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.BayesImEditor
</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.BayesImParamsEditor
</params-editor-class>
</model>
<model name="Dirichlet Bayes Instantiated Model"
acronym="Dir Bayes IM" help="dirichlet_bayes_im">
<logger>
<event id="info" description="Information" default="on"/>
<event id="im" description="Instantiated Model" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.DirichletBayesImWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DirichletBayesImEditor
</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.DirichletBayesImParamsEditor
</params-editor-class>
</model>
<model name="SEM Instantiated Model" acronym="SEM IM" help="sem_im">
<logger>
<event id="info" description="Information" default="on"/>
<event id="im" description="Instantiated Model" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.SemImWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.SemImEditor
</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.SemImParamsEditor
</params-editor-class>
</model>
<model name="Standardized SEM Instantiated Model" acronym="St SEM IM" help="sem_im">
<logger>
<event id="info" description="Information" default="on"/>
<event id="im" description="Instantiated Model" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.StandardizedSemImWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.StandardizedSemImEditor</editor-class>
</model>
<model name="Generalized SEM Instantiated Model" acronym="Gen. SEM IM" help="gen_sem_im">
<logger>
<event id="info" description="Information" default="on"/>
<event id="im" description="Instantiated Model" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.GeneralizedSemImWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.GeneralizedSemImEditor</editor-class>
</model>
</models>
<display-component image="imIcon.gif"/>
<model-chooser title="Types of Instantiated Models"/>
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) PM (Bayes or SEM), OR
<br> (2) Estimator (to extract IM)
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="Data">
<models>
<model name="Data" acronym="Data" help="data" category="Data">
<model-class>edu.cmu.tetradapp.model.DataWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<!-- Merge Deterministic Variables for interventional data, added by Zhou -->
<model name="Merge Deterministic Interventional Variables" acronym="Determinism" help="data"
category="Manipulation of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.DeterminismWraper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.datamanip.DeterminismEditor
</params-editor-class>
</model>
<model name="Discretize Dataset" acronym="Discretize" help="data"
category="Manipulation of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.DiscretizationWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.datamanip.DiscretizationParamsEditor
</params-editor-class>
</model>
<model name="Convert Numerical Discrete To Continuous" acronym="Continuize" help="convertdiscrete"
category="Manipulation of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.ConvertNumericalDiscreteToContinuousWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Calculator" acronym="Calculator" help="data"
category="Manipulation of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.CalculatorWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
<params-editor-class>edu.cmu.tetradapp.editor.CalculatorEditor
</params-editor-class>
</model>
<model name="Collect Data Sets In One Box" acronym="Collect Data Sets In One Box"
help="mergedatasets" category="Manipulation of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.MergeDatasetsWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Selected Dataset" acronym="Selected Dataset"
help="extractselecteddata" category="Manipulation of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.SelectedDataset
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Convert to Correlation Matrix" acronym="Corr Matrix"
help="corr" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.CorrMatrixConverter
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Convert to Covariance Matrix" acronym="Cov Matrix"
help="covariances" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.CovMatrixWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Inverse Matrix" acronym="Cov Matrix"
help="covariances" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.InverseMatrixWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Simulate Tabular From Covariance" acronym="SimFromCov"
help="simfromcov" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.SimulateFromCovWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Difference of Covariance Matrices" acronym="Cov Matrix Diff"
help="covdiff" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.CovMatrixDifferenceWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Sum of Covariance Matrices" acronym="Cov Matrix Sum"
help="covsum" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.CovMatrixSumWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Average of Covariance Matrices" acronym="Cov Matrix Average"
help="covavg" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.CovMatrixAverageWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Convert to Time Lag Data" acronym="Time Lag"
help="data" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.TimeSeriesWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.datamanip.TimeSeriesParamsEditor
</params-editor-class>
</model>
<model name="Add an index variable" acronym="Add Index"
help="data" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.TimeSeriesWrapper2
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Convert to AR residuals" acronym="AR Residuals"
help="data" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.ArResidualsWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.datamanip.ArResidualsParamsEditor
</params-editor-class>
</model>
<model name="Logarithmic Transform" acronym="Log"
help="data" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.LogData
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
<params-editor-class>edu.cmu.tetradapp.editor.LogParamsEditor</params-editor-class>
</model>
<model name="Nonparanormal Transform" acronym="NonPN"
help="nonpn" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.NonparanormalTransform
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Convert to residuals" acronym="Residuals"
help="data" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.ResidualsWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Remove Cases with Missing Values"
acronym="Remove Cases" help="data"
category="Missing Values">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.RemoveMissingValueCasesWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Replace Missing Values with Column Mode"
acronym="Replace Mode" help="data"
category="Missing Values">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.ModeInterpolatorWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Replace Missing Values with Column Mean"
acronym="Replace Mean" help="data"
category="Missing Values">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.MeanInterpolatorWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Replace Missing Values by Extra Category"
acronym="Replace Category" help="data"
category="Missing Values">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.ExtraCategoryInterpolatorWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Replace Missing With Random" acronym="Replace Randomly"
help="data" category="Missing Values">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.ReplaceMissingWithRandomWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Inject Missing Data Randomly" acronym="Inject Missing"
help="data" category="Missing Values">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.MissingDataInjectorWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.MissingDataInjectorParamsEditor
</params-editor-class>
</model>
<model name="Standardize Data" acronym="Standardized"
help="data" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.DataStandardizer
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Center Data" acronym="Centered"
help="data" category="Conversion of Data">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.DataCenterer
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Bootstrap Sample"
acronym="Bootstrap" help="data" category="Row operations">
<logger>
<event id="sampleSize" description="Sample Size"
default="on"/>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.BootstrapSamplerWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.BootstrapSamplerParamsEditor
</params-editor-class>
</model>
<model name="Split By Cases" acronym="Split Cases" help="split"
category="Row operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.SplitCasesWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.SplitCasesParamsEditor
</params-editor-class>
</model>
<model name="Permute Rows" acronym="Permute Rows" help="permuterows"
category="Row operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.PermuteRowsWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="First Differences" acronym="FirstDiff" help="firstdiff"
category="Row operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.datamanip.FirstDifferencesWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Concatenate Datasets" acronym="Concatenate"
help="concatenate" category="Row operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.ConcatenateDatasetsWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Copy Continuous Variables" acronym="Copy Continuous"
help="data" category="Column operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.SubsetContinuousVariablesWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Copy Discrete Variables" acronym="Copy Discrete"
help="data" category="Column operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.SubsetDiscreteVariablesWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Copy Selected Variables" acronym="Copy Selected"
help="data" category="Column operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.SubsetSelectedVariablesWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Remove Selected Variables" acronym="Copy Selected"
help="data" category="Column operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.RemoveSelectedVariablesWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Remove Constant Columns" acronym="Remove Values"
help="data" category="Column operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.RemoveConstantColumnsWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Randomly reorder columns" acronym="Reorder Columns"
help="data" category="Column operations">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>
edu.cmu.tetradapp.model.datamanip.ReorderColumnsWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Implied Covariance Matrix--Measured" acronym="Implied Covar Meas" help="data"
category="implied">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.ImpliedCovarianceDataWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
<model name="Implied Covariance Matrix--All" acronym="Implied Covar All" help="data"
category="implied">
<logger>
<event id="info" description="Information" default="on"/>
<event id="data" description="Data"/>
</logger>
<model-class>edu.cmu.tetradapp.model.ImpliedCovarianceDataAllWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DataEditor</editor-class>
</model>
</models>
<display-component image="dataIcon.gif"/>
<model-chooser title="Types of Data Manipulations">
edu.cmu.tetradapp.app.CategorizingModelChooser
</model-chooser>
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) Data, OR
<br> (2) Data Manipulation Node
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="Simulation">
<models>
<model name="Simulation" acronym="Simulation" help="data" category="Data">
<model-class>edu.cmu.tetradapp.model.Simulation</model-class>
<editor-class>edu.cmu.tetradapp.editor.SimulationEditor</editor-class>
</model>
</models>
<!-- Reuse the data icon -->
<display-component image="dataIcon.gif"/>
<model-chooser title="Simulation"/>
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) Simulated Data, OR
<br> (2) Data Manipulation Node
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="Estimator">
<models>
<model name="ML Bayes Estimator" acronym="ML Bayes Est"
help="bayes_estimator">
<logger>
<event id="info" description="Information" default="on"/>
<event id="im" description="Estimated Model"/>
</logger>
<model-class>edu.cmu.tetradapp.model.BayesEstimatorWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.BayesEstimatorEditor
</editor-class>
</model>
<model name="SEM Estimator" acronym="SEM Est" help="sem_estimator">
<logger>
<event id="info" description="Information" default="on"/>
<event id="details" description="Details" default="on"/>
<event id="stats" description="Stats" default="on"/>
<event id="optimization" description="Optimization" default="on"/>
<event id="im" description="Estimated Model"/>
</logger>
<model-class>edu.cmu.tetradapp.model.SemEstimatorWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.SemEstimatorEditor
</editor-class>
</model>
<model name="Generalized SEM Estimator" acronym="Gen. SEM Est" help="gen_sem_est">
<logger>
<event id="info" description="Information" default="on"/>
<event id="im" description="Instantiated Model" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.GeneralizedSemEstimatorWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.GeneralizedSemEstimatorEditor</editor-class>
</model>
<model name="Dirichlet Estimator" acronym="Dir Bayes Est"
help="dirichlet_estimator">
<logger>
<event id="info" description="Information" default="on"/>
<event id="im" description="Estimated Model"/>
</logger>
<model-class>edu.cmu.tetradapp.model.DirichletEstimatorWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.DirichletBayesImEditor
</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.DirichletEstimatorParamsEditor
</params-editor-class>
</model>
<model name="EM Bayes Estimator" acronym="Em Bayes Est" help="em_bayes_estimator">
<logger>
<event id="info" description="Information" default="on"/>
<!--For some reason this won't log. 7/20/09-->
<!--<event id="optimization" description="Optimization"/>-->
<event id="im" description="Estimated Model"/>
</logger>
<model-class>edu.cmu.tetradapp.model.EmBayesEstimatorWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.EmBayesEstimatorEditor</editor-class>
<params-editor-class>edu.cmu.tetradapp.editor.EMBayesEstimatorParamsEditor</params-editor-class>
</model>
</models>
<display-component image="estimatorIcon.gif"/>
<model-chooser title="Types of Estimators"/>
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) PM and Data, OR
<br> (2) IM and Data (shortcut for IM->PM + Data)
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="Updater">
<models>
<model name="Approximate Updater" acronym="Aprox Up"
help="aproximmate_updater">
<logger>
<event id="info" description="Information" default="on"/>
<event id="details" description="Details"/>
</logger>
<model-class>edu.cmu.tetradapp.model.ApproximateUpdaterWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.BayesUpdaterEditor
</editor-class>
</model>
<model name="Row Summing Exact Updater" acronym="Row Sum"
help="row_summing_updater">
<logger>
<event id="info" description="Information" default="on"/>
<event id="details" description="Details"/>
</logger>
<model-class>edu.cmu.tetradapp.model.RowSummingExactWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.BayesUpdaterEditor
</editor-class>
</model>
<!-- <model name="CPT Invariant Exact Updater" acronym="CPT Inv"-->
<!-- help="cpt_updater">-->
<!-- <logger>-->
<!-- <event id="info" description="Information" default="on"/>-->
<!-- <event id="details" description="Details"/>-->
<!-- </logger>-->
<!-- <model-class>edu.cmu.tetradapp.model.CptInvariantUpdaterWrapper-->
<!-- </model-class>-->
<!-- <editor-class>edu.cmu.tetradapp.editor.BayesUpdaterEditor-->
<!-- </editor-class>-->
<!-- </model>-->
<model name="SEM Updater" acronym="SEM Up" help="sem_updater">
<model-class>edu.cmu.tetradapp.model.SemUpdaterWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.SemUpdaterEditor
</editor-class>
</model>
<model name="Junction Tree Algorithm Updater" acronym="Junction Tree" help="jta_updater">
<logger>
<event id="info" description="Information" default="on"/>
<event id="details" description="Details"/>
</logger>
<model-class>edu.cmu.tetradapp.model.JunctionTreeWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.BayesUpdaterEditor
</editor-class>
</model>
<model name="Identifiability" acronym="Ident"
help="ident_help">
<logger>
<event id="info" description="Information" default="on"/>
<event id="details" description="Details"/>
</logger>
<model-class>edu.cmu.tetradapp.model.IdentifiabilityWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.BayesUpdaterEditorObs
</editor-class>
</model>
</models>
<display-component image="searchIcon.gif"/>
<model-chooser title="Types of Updaters"/>
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) IM (Bayes only)
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="Search">
<models>
<model name="Algorithms that Generate Graphs" acronym="Algorithm" help="algorithm" category="General">
<logger>
<event id="info" description="Information" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.GeneralAlgorithmRunner</model-class>
<editor-class>edu.cmu.tetradapp.editor.GeneralAlgorithmEditor
</editor-class>
</model>
</models>
<display-component image="searchIcon.gif"/>
<model-chooser title="Types of Search Algorithms">
edu.cmu.tetradapp.app.CategorizingModelChooser
</model-chooser>
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) Data or Simulation, OR
<br> (2) Graph (searches directly over graph) OR
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="Regression">
<models>
<model name="Multiple Linear Regression" acronym="Mult Lin Reg"
help="multi_regression">
<logger>
<event id="info" description="Information" default="on"/>
<event id="result" description="Result" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.RegressionRunner
</model-class>
<editor-class>edu.cmu.tetradapp.editor.RegressionEditor
</editor-class>
</model>
<model name="Logistic Regression" acronym="Log Reg"
help="log_regression">
<logger>
<event id="info" description="Information" default="on"/>
<event id="result" description="Result" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.LogisticRegressionRunner
</model-class>
<editor-class>edu.cmu.tetradapp.editor.LogisticRegressionEditor
</editor-class>
</model>
</models>
<display-component image="searchIcon.gif"/>
<model-chooser title="Types of Regression"/>
<node-specific-message>
<![CDATA[
<html> Allowable Input Nodes:
<br> (1) Data (Continuous)
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="Compare">
<models>
<model name="Edgewise Comparison" acronym="Edge Comp"
help="edge_comparison" category="Graph-Graph Comparisons">
<logger>
<event id="info" description="Information" default="on"/>
<event id="comparison" description="Comparison" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.EdgewiseComparisonModel
</model-class>
<editor-class>edu.cmu.tetradapp.editor.EdgewiseComparisonEditor</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.EdgewiseComparisonParamsEditor
</params-editor-class>
</model>
<model name="Stats List Comparison" acronym="Stats List"
help="tabular_comparison" category="Graph-Graph Comparisons">
<logger>
<event id="info" description="Information" default="on"/>
<event id="comparison" description="Comparison" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.TabularComparison
</model-class>
<editor-class>edu.cmu.tetradapp.editor.StatsListEditor</editor-class>
<!-- <editor-class>edu.cmu.tetradapp.editor.TabularComparisonEditor</editor-class>-->
<params-editor-class>
edu.cmu.tetradapp.editor.EdgewiseComparisonParamsEditor
</params-editor-class>
</model>
<model name="Misclassifications" acronym="Misclassifications"
help="misclassifications" category="Graph-Graph Comparisons">
<logger>
<event id="info" description="Information" default="on"/>
<event id="comparison" description="Comparison" default="on"/>
<event id="adjacenciesApp" description="Adj but marked App-Nonadj" default="on"/>
<event id="adjacenciesDef" description="Adj but marked Def-Nonadj" default="on"/>
<event id="nonadjacenciesApp" description="Non-Adj but marked App-Nonadj" default="on"/>
<event id="nonadjacenciesDef" description="Non-Adj but marked Def-Nonadj" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.Misclassifications
</model-class>
<editor-class>edu.cmu.tetradapp.editor.MisclassificationsEditor</editor-class>
<params-editor-class>
edu.cmu.tetradapp.editor.EdgewiseComparisonParamsEditor
</params-editor-class>
</model>
<model name="Graph Intersections" acronym="Intersections"
help="intersections" category="Graph-Graph Comparisons">
<logger>
<event id="info" description="Information" default="on"/>
<event id="graph" description="Graph" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.editor.GraphAdjacencyIntersectionWrapper
</model-class>
<editor-class>edu.cmu.tetradapp.editor.GraphIntersectionsEditor
</editor-class>
</model>
<model name="Independence Facts" acronym="Ind Facts"
help="indep_facts" category="Independence Facts Comparison">
<logger>
<event id="info" description="Information" default="on"/>
<event id="comparison" description="Comparison" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.IndTestModel
</model-class>
<editor-class>edu.cmu.tetradapp.editor.IndependenceFactsEditor</editor-class>
</model>
<model name="Markov Check" acronym="Markov Check"
help="indep_facts" category="Independence Facts Comparison">
<logger>
<event id="info" description="Information" default="on"/>
<event id="comparison" description="Comparison" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.MarkovCheckIndTestModel
</model-class>
<editor-class>edu.cmu.tetradapp.editor.MarkovCheckEditor</editor-class>
</model>
<model name="Edge Weight Similarity Comparison" acronym="EdgeWeightSim"
help="tabular_comparison" category="SEM IM-SEM IM Comparisons">
<logger>
<event id="info" description="Information" default="on"/>
<event id="comparison" description="Comparison" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.EdgeWeightComparison
</model-class>
<editor-class>edu.cmu.tetradapp.editor.EdgeWeightComparisonEditor</editor-class>
</model>
<model name="Model Fit" acronym="Model Fit"
help="Model Fit" category="Simulation-Algorithm Comparisons">
<model-class>edu.cmu.tetradapp.model.CPDAGFitModel
</model-class>
<editor-class>edu.cmu.tetradapp.editor.CPDAGFitEditor</editor-class>
</model>
<model name="Check Knowledge" acronym="Check Knowledge"
help="check_knowledge" category="Graph-Knowledge Comparisons">
<logger>
<event id="info" description="Information" default="on"/>
<event id="comparison" description="Comparison" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.CheckKnowledgeModel
</model-class>
<editor-class>edu.cmu.tetradapp.editor.CheckKnowledgeEditor</editor-class>
</model>
</models>
<display-component image="graphIcon.gif"/>
<model-chooser title="Types of Comparisons">
edu.cmu.tetradapp.app.CategorizingModelChooser
</model-chooser>
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) Simulation and Search
<br> (2) Several boxes containing graphs.
<br> (3) Several boxes containing independence tests.
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
<session-node id="Note">
<models>
<model name="Note" acronym="Note" help="note">
<model-class>edu.cmu.tetradapp.model.NoteModel</model-class>
<editor-class>edu.cmu.tetradapp.editor.NoteEditor</editor-class>
</model>
</models>
<display-component>edu.cmu.tetradapp.app.NoteDisplayComp
</display-component>
<model-chooser title="Types of Notes"/>
<node-specific-message/>
</session-node>
<session-node id="Knowledge">
<models>
<model name="Tiers and Edges" acronym="Tiers-Edges" help="tiers.edges">
<logger>
<event id="info" description="Information" default="on"/>
<event id="knowledge" description="Knowledge" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.KnowledgeBoxModel</model-class>
<editor-class>edu.cmu.tetradapp.knowledge_editor.KnowledgeBoxEditor</editor-class>
</model>
<model name="Forbidden Graph" acronym="Forb-Graph" help="forb.graph">
<logger>
<event id="info" description="Information" default="on"/>
<event id="knowledge" description="Knowledge" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.ForbiddenGraphModel</model-class>
<editor-class>edu.cmu.tetradapp.knowledge_editor.KnowledgeBoxEditor</editor-class>
</model>
<model name="Required Graph" acronym="Req-Graph" help="req.graph">
<logger>
<event id="info" description="Information" default="on"/>
<event id="knowledge" description="Knowledge" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.RequiredGraphModel</model-class>
<editor-class>edu.cmu.tetradapp.knowledge_editor.KnowledgeBoxEditor</editor-class>
</model>
<model name="Remove Non-Skeleton Edges" acronym="Rem-Non-Skel-Graph" help="remove.non-sk.graph">
<logger>
<event id="info" description="Information" default="on"/>
<event id="knowledge" description="Knowledge" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.RemoveNonSkeletonEdgesModel</model-class>
<editor-class>edu.cmu.tetradapp.knowledge_editor.KnowledgeBoxEditor</editor-class>
</model>
<!-- <model name="Independence Facts" acronym="IndFacts" help="indfacts">-->
<!-- <logger>-->
<!-- <event id="info" description="Information" default="on"/>-->
<!-- <event id="knowledge" description="Knowledge" default="on"/>-->
<!-- </logger>-->
<!-- <model-class>edu.cmu.tetradapp.model.IndependenceFactsModel</model-class>-->
<!-- <editor-class>edu.cmu.tetradapp.knowledge_editor.IndependenceFactsEditor</editor-class>-->
<!-- </model>-->
<model name="Measurement Model" acronym="Meas. Model" help="mm"
category="Multiple Indicator Model searches">
<logger>
<event id="info" description="Information" default="on"/>
<event id="details" description="Misc Fine Details" default="on"/>
</logger>
<model-class>edu.cmu.tetradapp.model.MeasurementModelWrapper</model-class>
<editor-class>edu.cmu.tetradapp.editor.ClusterEditor
</editor-class>
</model>
</models>
<display-component image="searchIcon.gif"/>
<!--<display-component image="graduation_hat1.png"/>-->
<model-chooser title="Types of Knowledge"/>
<node-specific-message>
<![CDATA[
<html> This box assumes certain inputs; please see the manual. Possible inputs are:
<br> (1) Any box that contains a set of variables.
<br> Note that for the parent boxes, models need to have been created.
</html>
]]>
</node-specific-message>
</session-node>
</tetrad-configuration> © 2015 - 2025 Weber Informatics LLC | Privacy Policy