edu.cmu.tetradapp.model.CalculatorWrapper Maven / Gradle / Ivy
///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// Copyright (C) 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, //
// 2007, 2008, 2009, 2010, 2014, 2015, 2022 by Peter Spirtes, Richard //
// Scheines, Joseph Ramsey, and Clark Glymour. //
// //
// This program is free software; you can redistribute it and/or modify //
// it under the terms of the GNU General Public License as published by //
// the Free Software Foundation; either version 2 of the License, or //
// (at your option) any later version. //
// //
// This program is distributed in the hope that it will be useful, //
// but WITHOUT ANY WARRANTY; without even the implied warranty of //
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
// GNU General Public License for more details. //
// //
// You should have received a copy of the GNU General Public License //
// along with this program; if not, write to the Free Software //
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA //
///////////////////////////////////////////////////////////////////////////////
package edu.cmu.tetradapp.model;
import edu.cmu.tetrad.calculator.Transformation;
import edu.cmu.tetrad.data.*;
import edu.cmu.tetrad.graph.Node;
import edu.cmu.tetrad.util.Parameters;
import edu.cmu.tetrad.util.TetradSerializableUtils;
import java.io.IOException;
import java.io.ObjectInputStream;
import java.text.ParseException;
import java.util.ArrayList;
import java.util.List;
/**
* @author Tyler
*/
public class CalculatorWrapper extends DataWrapper {
private static final long serialVersionUID = 23L;
/**
* Constructs the DiscretizationWrapper
by discretizing the select
* DataModel
.
*/
public CalculatorWrapper(DataWrapper data, Parameters params) {
if (data == null) {
throw new NullPointerException("The given data must not be null");
}
if (params == null) {
throw new NullPointerException("The given parameters must not be null");
}
DataModelList list = new DataModelList();
DataModelList originals = data.getDataModelList();
for (DataModel model : originals) {
DataSet copy = CalculatorWrapper.copy((DataSet) model);
List equations = new ArrayList<>();
int size = ((List) params.get("equations", null)).size();
String[] displayEquations = ((List) params.get("equations", null)).toArray(new String[size]);
for (String equation : displayEquations) {
if (equation.contains("$")) {
for (Node node : copy.getVariables()) {
equations.add(equation.replace("$", node.getName()));
}
} else {
equations.add(equation);
}
}
if (!equations.isEmpty()) {
try {
Transformation.transform(copy, equations.toArray(new String[0]));
} catch (ParseException e) {
throw new IllegalStateException("Was given unparsable expressions.");
}
}
list.add(copy);
}
setDataModel(list);
setSourceGraph(data.getSourceGraph());
LogDataUtils.logDataModelList("Result data from a calculator operation.", getDataModelList());
}
/**
* Generates a simple exemplar of this class to test serialization.
*
* @see TetradSerializableUtils
*/
public static PcRunner serializableInstance() {
return PcRunner.serializableInstance();
}
//=============================== Private Methods =========================//
private static DataSet copy(DataSet data) {
DataSet copy = new BoxDataSet(new DoubleDataBox(data.getNumRows(), data.getVariables().size()), data.getVariables());
int cols = data.getNumColumns();
int rows = data.getNumRows();
for (int col = 0; col < cols; col++) {
for (int row = 0; row < rows; row++) {
copy.setDouble(row, col, data.getDouble(row, col));
}
}
return copy;
}
/**
* Adds semantic checks to the default deserialization method. This method must have the standard signature for a
* readObject method, and the body of the method must begin with "s.defaultReadObject();". Other than that, any
* semantic checks can be specified and do not need to stay the same from version to version. A readObject method of
* this form may be added to any class, even if Tetrad sessions were previously saved out using a version of the
* class that didn't include it. (That's what the "s.defaultReadObject();" is for. See J. Bloch, Effective Java, for
* help.
*/
@SuppressWarnings("MethodMayBeStatic")
private void readObject(ObjectInputStream s)
throws IOException, ClassNotFoundException {
s.defaultReadObject();
}
}
© 2015 - 2025 Weber Informatics LLC | Privacy Policy