edu.cmu.tetradapp.editor.EmBayesEstimatorEditor Maven / Gradle / Ivy
///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// Copyright (C) 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, //
// 2007, 2008, 2009, 2010, 2014, 2015, 2022 by Peter Spirtes, Richard //
// Scheines, Joseph Ramsey, and Clark Glymour. //
// //
// This program is free software; you can redistribute it and/or modify //
// it under the terms of the GNU General Public License as published by //
// the Free Software Foundation; either version 2 of the License, or //
// (at your option) any later version. //
// //
// This program is distributed in the hope that it will be useful, //
// but WITHOUT ANY WARRANTY; without even the implied warranty of //
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
// GNU General Public License for more details. //
// //
// You should have received a copy of the GNU General Public License //
// along with this program; if not, write to the Free Software //
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA //
///////////////////////////////////////////////////////////////////////////////
package edu.cmu.tetradapp.editor;
import edu.cmu.tetrad.bayes.BayesIm;
import edu.cmu.tetrad.bayes.EmBayesProperties;
import edu.cmu.tetrad.data.DataSet;
import edu.cmu.tetrad.graph.Graph;
import edu.cmu.tetrad.util.NumberFormatUtil;
import edu.cmu.tetradapp.model.EmBayesEstimatorWrapper;
import edu.cmu.tetradapp.workbench.GraphWorkbench;
import javax.swing.*;
import java.awt.*;
import java.text.NumberFormat;
/**
* An editor for Bayes net instantiated models. Assumes that the workbench and parameterized model have been established
* (that is, that the nodes have been identified and named and that the number and names of the values for the nodes
* have been specified) and allows the user to set conditional probabilities of node values given combinations of parent
* values.
*
* @author Aaron Powers
* @author josephramsey
* @author Frank Wimberly - adapted for EM Bayes estimator and Strucural EM Bayes estimator
*/
public class EmBayesEstimatorEditor extends JPanel {
private static final long serialVersionUID = -5645975222086813463L;
/**
* The wizard that allows the user to modify parameter values for this IM.
*/
private final EMBayesEstimatorEditorWizard wizard;
/**
* Constructs a new instanted model editor from a Bayes IM.
*/
private EmBayesEstimatorEditor(BayesIm bayesIm,
DataSet dataSet) {
if (bayesIm == null) {
throw new NullPointerException("Bayes IM must not be null.");
}
Graph graph = bayesIm.getBayesPm().getDag();
GraphWorkbench workbench = new GraphWorkbench(graph);
this.wizard = new EMBayesEstimatorEditorWizard(bayesIm, workbench);
this.wizard.enableEditing(false);
// Add a menu item to allow the BayesIm to be saved out in
// causality lab format.
JMenuBar menuBar = new JMenuBar();
setLayout(new BorderLayout());
add(menuBar, BorderLayout.NORTH);
JMenu file = new JMenu("File");
menuBar.add(file);
// file.add(new SaveScreenshot(this, true, "Save Screenshot..."));
file.add(new SaveComponentImage(workbench, "Save Graph Image..."));
setLayout(new BorderLayout());
add(menuBar, BorderLayout.NORTH);
// Rest of setup.
this.wizard.addPropertyChangeListener(evt -> {
if ("editorValueChanged".equals(evt.getPropertyName())) {
firePropertyChange("modelChanged", null, null);
}
});
JScrollPane workbenchScroll = new JScrollPane(workbench);
workbenchScroll.setPreferredSize(new Dimension(400, 400));
JScrollPane wizardScroll = new JScrollPane(getWizard());
EmBayesProperties scorer = new EmBayesProperties(dataSet, graph);
scorer.setGraph(graph);
StringBuilder buf = new StringBuilder();
buf.append("\nP-value = ").append(scorer.getLikelihoodRatioP());
buf.append("\nDf = ").append(scorer.getPValueDf());
/*
Formats numbers.
*/
NumberFormat nf = NumberFormatUtil.getInstance().getNumberFormat();
buf.append("\nChi square = ").append(
nf.format(scorer.getPValueChisq()));
buf.append("\nBIC score = ").append(nf.format(scorer.getBic()));
buf.append("\n\nH0: Completely disconnected graph.");
JTextArea modelParametersText = new JTextArea();
modelParametersText.setText(buf.toString());
JTabbedPane tabbedPane = new JTabbedPane();
tabbedPane.add("Model", wizardScroll);
tabbedPane.add("Model Statistics", modelParametersText);
JSplitPane splitPane = new JSplitPane(JSplitPane.HORIZONTAL_SPLIT,
workbenchScroll, tabbedPane);
splitPane.setOneTouchExpandable(true);
splitPane.setDividerLocation(workbenchScroll.getPreferredSize().width);
add(splitPane, BorderLayout.CENTER);
setName("Bayes IM Editor");
getWizard().addPropertyChangeListener(evt -> {
if ("editorClosing".equals(evt.getPropertyName())) {
firePropertyChange("editorClosing", null, getName());
}
if ("closeFrame".equals(evt.getPropertyName())) {
firePropertyChange("closeFrame", null, null);
firePropertyChange("editorClosing", true, true);
}
});
}
/**
* Constructs a new Bayes IM Editor from a Bayes estimator wrapper.
*/
public EmBayesEstimatorEditor(EmBayesEstimatorWrapper emBayesEstWrapper) {
this(emBayesEstWrapper.getEstimateBayesIm(),
//eMbayesEstWrapper.getSelectedDataModel());
emBayesEstWrapper.getDataSet());
}
/**
* Sets the name of this editor.
*/
public void setName(String name) {
String oldName = getName();
super.setName(name);
this.firePropertyChange("name", oldName, getName());
}
/**
* @return a reference to this editor.
*/
private EMBayesEstimatorEditorWizard getWizard() {
return this.wizard;
}
}
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