edu.cmu.tetrad.algcomparison.independence.DiscreteBicTest Maven / Gradle / Ivy
package edu.cmu.tetrad.algcomparison.independence;
import edu.cmu.tetrad.annotation.Experimental;
import edu.cmu.tetrad.annotation.TestOfIndependence;
import edu.cmu.tetrad.data.DataModel;
import edu.cmu.tetrad.data.DataType;
import edu.cmu.tetrad.data.SimpleDataLoader;
import edu.cmu.tetrad.search.IndependenceTest;
import edu.cmu.tetrad.search.score.DiscreteBicScore;
import edu.cmu.tetrad.search.test.ScoreIndTest;
import edu.cmu.tetrad.util.Parameters;
import edu.cmu.tetrad.util.Params;
import java.util.ArrayList;
import java.util.List;
/**
* Wrapper for Fisher Z test.
*
* @author josephramsey
*/
@TestOfIndependence(
name = "Discrete BIC Test",
command = "disc-bic-test",
dataType = DataType.Discrete
)
@Experimental
public class DiscreteBicTest implements IndependenceWrapper {
private static final long serialVersionUID = 23L;
@Override
public IndependenceTest getTest(DataModel dataSet, Parameters parameters) {
DiscreteBicScore score = new DiscreteBicScore(SimpleDataLoader.getDiscreteDataSet(dataSet));
score.setPenaltyDiscount(parameters.getDouble(Params.PENALTY_DISCOUNT));
score.setStructurePrior(parameters.getDouble(Params.STRUCTURE_PRIOR));
return new ScoreIndTest(score);
}
@Override
public String getDescription() {
return "Discrete BIC Test";
}
@Override
public DataType getDataType() {
return DataType.Discrete;
}
@Override
public List getParameters() {
List parameters = new ArrayList<>();
parameters.add(Params.PENALTY_DISCOUNT);
parameters.add(Params.STRUCTURE_PRIOR);
return parameters;
}
}