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///////////////////////////////////////////////////////////////////////////////
// For information as to what this class does, see the Javadoc, below. //
// Copyright (C) 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, //
// 2007, 2008, 2009, 2010, 2014, 2015, 2022 by Peter Spirtes, Richard //
// Scheines, Joseph Ramsey, and Clark Glymour. //
// //
// This program is free software; you can redistribute it and/or modify //
// it under the terms of the GNU General Public License as published by //
// the Free Software Foundation; either version 2 of the License, or //
// (at your option) any later version. //
// //
// This program is distributed in the hope that it will be useful, //
// but WITHOUT ANY WARRANTY; without even the implied warranty of //
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the //
// GNU General Public License for more details. //
// //
// You should have received a copy of the GNU General Public License //
// along with this program; if not, write to the Free Software //
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA //
///////////////////////////////////////////////////////////////////////////////
package edu.cmu.tetrad.study.gene.tetradapp.model;
import edu.cmu.tetrad.study.gene.tetrad.gene.history.LagGraph;
import edu.cmu.tetrad.util.TetradSerializable;
import java.io.IOException;
import java.io.ObjectInputStream;
/**
* Implements a parametric gene model.
*
* @author josephramsey
*/
public abstract class GenePm implements TetradSerializable {
private static final long serialVersionUID = 23L;
/**
* The wrapped lag workbench.
*
* @serial Cannot be null.
*/
private final LagGraph lagGraph;
/**
* Construct a new gene pm, wrapping the given lag workbench.
*/
public GenePm(LagGraph lagGraph) {
if (lagGraph == null) {
throw new NullPointerException();
}
this.lagGraph = lagGraph;
}
/**
* Gets the lag workbench that is wrapped.
*/
public LagGraph getLagGraph() {
return this.lagGraph;
}
/**
* Adds semantic checks to the default deserialization method. This method must have the standard signature for a
* readObject method, and the body of the method must begin with "s.defaultReadObject();". Other than that, any
* semantic checks can be specified and do not need to stay the same from version to version. A readObject method of
* this form may be added to any class, even if Tetrad sessions were previously saved out using a version of the
* class that didn't include it. (That's what the "s.defaultReadObject();" is for. See J. Bloch, Effective Java, for
* help.
*/
private void readObject(ObjectInputStream s)
throws IOException, ClassNotFoundException {
s.defaultReadObject();
if (this.lagGraph == null) {
throw new NullPointerException();
}
}
}