docs.javahelp.TetradHelpTOC.xml Maven / Gradle / Ivy
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<?xml version='1.0' encoding='ISO-8859-1' ?>
<!DOCTYPE toc
PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp TOC Version 1.0//EN"
"http://java.sun.com/products/javahelp/toc_1_0.dtd">
<toc version="1.0">
<tocitem text="TETRAD Overview" target="tetrad_overview"/>
<tocitem text="TETRAD Manual" target="manual">
<tocitem text="Main Workspace Explained" target="main_workspace_explained">
<tocitem text="Tetrad Versioning" target="tetrad_versioning"/>
<tocitem text="Tetrad Menubar" target="tetrad_menubar"/>
<tocitem text="Tetrad Toolbar" target="tetrad_toolbar"/>
<tocitem text="How to Build a Session" target="how_to_build_a_session"/>
</tocitem>
<tocitem text="Each Box Explained" image="toplevelfolder" target="each_box_explained">
<tocitem text="Graph" target="graph_box">
<tocitem text="Directed Acyclic Graph" target="graph_dag"/>
<tocitem text="SEM Graph" target="graph_sem"/>
<tocitem text="Time Series Graph" target="graph_time"/>
</tocitem>
<tocitem text="Parametric Model (PM)" target="pm_box">
<tocitem text="Bayes Parametric Model" target="pm_bayes"/>
<tocitem text="SEM Parametric Model" target="pm_sem"/>
</tocitem>
<tocitem text="Instantiated Model (IM)" target="im_box">
<tocitem text="Bayes Instantiated Model" target="bayes_im"/>
<tocitem text="Dirichlet Bayes IM" target="dirichlet_bayes_im"/>
<tocitem text="SEM Instantiated Model" target="sem_im"/>
</tocitem>
<tocitem text="Data" target="data_box">
<tocitem text="Data Set List" target="data_set_list"/>
</tocitem>
<tocitem text="Manipulated Data" target="manipulated_data_box">
<!--<tocitem text="Manipulated Data" target="manipulated_data"/>-->
</tocitem>
<tocitem text="Estimate" target="estimate_box">
<tocitem text="ML Bayes Estimator" target="ml_bayes_estimator"/>
<tocitem text="Dirichlet Bayes Estimator" target="dirichlet_estimator"/>
<tocitem text="SEM Estimator" target="sem_estimator"/>
</tocitem>
<tocitem text="Update" target="update_box">
<tocitem text="Row Summing Updater" target="row_summing_updater"/>
<tocitem text="CPT Invariant Updater" target="cpt_invariant_updater"/>
<tocitem text="Approximate Updater" target="approximate_updater"/>
</tocitem>
<tocitem text="Search" target="search_box">
<tocitem text="Types of Algorithms" target="types_of_algorithms"/>
<tocitem text="BPC" target="bpc"/>
<tocitem text="CCD" target="ccd"/>
<tocitem text="CFCI" target="cfci"/>
<tocitem text="CPC" target="cpc"/>
<tocitem text="CPCS" target="cpcs"/>
<tocitem text="EB" target="eb"/>
<tocitem text="FAS" target="fas"/>
<tocitem text="FCI" target="fci"/>
<tocitem text="FGES" target="fges"/>
<tocitem text="FGESMB" target="fgesmb"/>
<tocitem text="CCDMAX" target="ccdmax"/>
<tocitem text="GFCI" target="gfci"/>
<tocitem text="GLASSO" target="glasso"/>
<tocitem text="IMaGES" target="images"/>
<tocitem text="LiNGAM" target="lingam"/>
<tocitem text="PC-MB" target="pc-mb"/>
<tocitem text="MGM" target="mgm"/>
<tocitem text="MIMBUILD" target="mimbuild"/>
<tocitem text="PC" target="pc"/>
<tocitem text="PCD" target="pcd"/>
<tocitem text="PCLocal" target="pclocal"/>
<tocitem text="PCStableMax" target="pcstablemax"/>
<tocitem text="PCStableMaxLocal" target="pcstablemaxlocal"/>
<tocitem text="PCstable" target="pcstable"/>
<tocitem text="Purify" target="purify"/>
<tocitem text="R1" target="r1"/>
<tocitem text="R2" target="r2"/>
<tocitem text="R3" target="r3"/>
<tocitem text="R4" target="r4"/>
<tocitem text="RFCI" target="rfci"/>
<tocitem text="RSkewW" target="rskew"/>
<tocitem text="RSkewE" target="rskewe"/>
<tocitem text="Skew" target="skew"/>
<tocitem text="SkewE" target="skewe"/>
<tocitem text="PC-Local" target="pclocal"/>
<tocitem text="svarFCI" target="svarfci"/>
<tocitem text="svarGFCI" target="svargfci"/>
<tocitem text="WFGES" target="wfges"/>
<tocitem text="BDeu Score" target="bdeu"/>
<tocitem text="Conditional Gaussian BIC score" target="conditional_gaussian_bic"/>
<tocitem text="Discrete BIC score" target="discrete_bic"/>
<tocitem text="SEM BIC score" target="sem_bic"/>
<tocitem text="Conditional Correlation Test" target="conditional_correlation"/>
<tocitem text="Chi Square Test" target="chisquare"/>
<tocitem text="G Square Test" target="gsquare"/>
<tocitem text="Conditional Gaussian LRT" target="conditional_gaussian_lrt"/>
<tocitem text="Conditional Correlation" target="conditional_correlation"/>
<tocitem text="Fisher Z Test" target="fisher_z"/>
<tocitem text="M-Separation" target="d_separation"/>
</tocitem>
<tocitem text="Regression" target="regression_box">
<tocitem text="Multiple Linear Regression" target="multiple_linear_regression"/>
<tocitem text="Logistic Regression" target="logistic_regression"/>
</tocitem>
<tocitem text="Classify" target="classify_box">
<tocitem text="Classify" target="classify_box"/>
</tocitem>
<tocitem text="Compare" target="compare_box">
<tocitem text="Compare" target="compare"/>
</tocitem>
</tocitem>
<!-- <tocitem text="Each Module Explained" image="toplevelfolder" target="each_module_explained">-->
<!-- </tocitem>-->
<tocitem text="Some Common Tasks" image="toplevelfolder" target="common_tasks">
<tocitem text="Copying, Cutting, Pasting" target="copying_and_pasting"/>
<tocitem text="Defining Discrete Variables" target="defining_discrete_variables"/>
<tocitem text="Destroying Models" target="destroying_models"/>
<tocitem text="Discretizing Data" target="discretizing_data"/>
<tocitem text="Editing Knowledge" target="editing_knowledge"/>
<tocitem text="Editing Node Properties" target="editing_node_properties"/>
<tocitem text="Exiting TETRAD" target="exiting_tetrad"/>
<tocitem text="Generating Random DAGs" target="generating_random_dags"/>
<tocitem text="Handling Missing Data" target="handling_missing_data"/>
<tocitem text="Opening Sessions" target="opening_sessions"/>
<tocitem text="Saving Screenshots" target="saving_screenshots"/>
<tocitem text="Saving Sessions" target="saving_sessions"/>
<tocitem text="Selecting Groups of Nodes" target="selecting_groups_of_nodes"/>
<tocitem text="Using Popup Menus" target="using_popup_menus"/>
<!--<tocitem text="Using Templates" target="using_templates"/>-->
</tocitem>
<tocitem text="Some Definitions" image="toplevelfolder" target="definitions">
<tocitem text="Measure-Structural Graph" target="measurement_structural_graph"/>
<tocitem text="Measured and Latent Variables" target="measured_latent_variables"/>
<tocitem text="Tetrad Graph Types" target="tetrad_graph_types"/>
</tocitem>
</tocitem>
<tocitem text="Tutorial" target="tetrad_tutorial"/>
<tocitem text="Why Doesn't TETRAD...?" target="why_doesnt_tetrad"/>
<tocitem text="For Further Help..." target="for_further_help"/>
<tocitem text="References" target="references"/>
</toc>