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Download lphy JAR 1.5.0 with all dependencies


The core of LPhy. LPhy is a probabilistic model specification language to concisely and precisely define phylogenetic models.

Files of the artifact lphy version 1.5.0 from the group io.github.linguaphylo.

Artifact lphy
Group io.github.linguaphylo
Version 1.5.0
Last update 01. February 2024
Tags: core precisely models concisely phylogenetic probabilistic lphy define specification model language
Organization not specified
URL https://linguaphylo.github.io/
License GNU Lesser General Public License, version 3
Dependencies amount 3
Dependencies antlr4-runtime, commons-math3, commons-lang3,
There are maybe transitive dependencies!
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Source code of lphy version 1.5.0

META-INF
META-INF.META-INF.LICENSE
META-INF.META-INF.MANIFEST.MF
META-INF.services
META-INF.services.META-INF.services.lphy.core.spi.Extension
lphy.core.codebuilder
lphy.core.codebuilder.lphy.core.codebuilder.CanonicalCodeBuilder
lphy.core.codebuilder.lphy.core.codebuilder.CodeBuilder
lphy.core.exception
lphy.core.exception.lphy.core.exception.MatchArgumentException
lphy.core.exception.lphy.core.exception.SimulatorParsingException
lphy.core.io
lphy.core.io.lphy.core.io.FileConfig
lphy.core.io.lphy.core.io.MacroProcessor
lphy.core.io.lphy.core.io.OutputSystem
lphy.core.io.lphy.core.io.PathVariables
lphy.core.io.lphy.core.io.UserDir
lphy.core.logger
lphy.core.logger.lphy.core.logger.Array2DElementFormatter
lphy.core.logger.lphy.core.logger.ArrayElementFormatter
lphy.core.logger.lphy.core.logger.LoggerUtils
lphy.core.logger.lphy.core.logger.RandomNumberLoggerListener
lphy.core.logger.lphy.core.logger.TextFileFormatted
lphy.core.logger.lphy.core.logger.ValueFileLoggerListener
lphy.core.logger.lphy.core.logger.ValueFormatHandler
lphy.core.logger.lphy.core.logger.ValueFormatResolver
lphy.core.logger.lphy.core.logger.ValueFormatter
lphy.core.model
lphy.core.model.lphy.core.model.BasicFunction
lphy.core.model.lphy.core.model.CodeStringUtils
lphy.core.model.lphy.core.model.DeterministicFunction
lphy.core.model.lphy.core.model.ExpressionNode
lphy.core.model.lphy.core.model.ExpressionUtils
lphy.core.model.lphy.core.model.GenerativeDistribution
lphy.core.model.lphy.core.model.GenerativeDistribution1D
lphy.core.model.lphy.core.model.Generator
lphy.core.model.lphy.core.model.GeneratorNarrative
lphy.core.model.lphy.core.model.GeneratorUtils
lphy.core.model.lphy.core.model.GraphicalModelNode
lphy.core.model.lphy.core.model.MultiDimensional
lphy.core.model.lphy.core.model.Narrative
lphy.core.model.lphy.core.model.NarrativeName
lphy.core.model.lphy.core.model.NarrativeTypeNameUtils
lphy.core.model.lphy.core.model.NarrativeUtils
lphy.core.model.lphy.core.model.RandomVariable
lphy.core.model.lphy.core.model.Symbols
lphy.core.model.lphy.core.model.Value
lphy.core.model.lphy.core.model.ValueListener
lphy.core.model.lphy.core.model.ValueUtils
lphy.core.model.lphy.core.model.VariableUtils
lphy.core.model.annotation
lphy.core.model.annotation.lphy.core.model.annotation.Citation
lphy.core.model.annotation.lphy.core.model.annotation.CitationUtils
lphy.core.model.annotation.lphy.core.model.annotation.GeneratorCategory
lphy.core.model.annotation.lphy.core.model.annotation.GeneratorInfo
lphy.core.model.annotation.lphy.core.model.annotation.MethodInfo
lphy.core.model.annotation.lphy.core.model.annotation.ParameterInfo
lphy.core.model.annotation.lphy.core.model.annotation.TypeInfo
lphy.core.model.datatype
lphy.core.model.datatype.lphy.core.model.datatype.Array2DUtils
lphy.core.model.datatype.lphy.core.model.datatype.BooleanArray2DValue
lphy.core.model.datatype.lphy.core.model.datatype.BooleanArrayValue
lphy.core.model.datatype.lphy.core.model.datatype.BooleanValue
lphy.core.model.datatype.lphy.core.model.datatype.DoubleArray2DValue
lphy.core.model.datatype.lphy.core.model.datatype.DoubleArrayValue
lphy.core.model.datatype.lphy.core.model.datatype.DoubleValue
lphy.core.model.datatype.lphy.core.model.datatype.IntegerArray2DValue
lphy.core.model.datatype.lphy.core.model.datatype.IntegerArrayValue
lphy.core.model.datatype.lphy.core.model.datatype.IntegerValue
lphy.core.model.datatype.lphy.core.model.datatype.MapValue
lphy.core.model.datatype.lphy.core.model.datatype.NumberArrayValue
lphy.core.model.datatype.lphy.core.model.datatype.NumberValue
lphy.core.model.datatype.lphy.core.model.datatype.RangeElement
lphy.core.model.datatype.lphy.core.model.datatype.StringArray2DValue
lphy.core.model.datatype.lphy.core.model.datatype.StringArrayValue
lphy.core.model.datatype.lphy.core.model.datatype.StringValue
lphy.core.model.datatype.lphy.core.model.datatype.Table
lphy.core.model.datatype.lphy.core.model.datatype.TableValue
lphy.core.model.datatype.lphy.core.model.datatype.Vector
lphy.core.model.datatype.lphy.core.model.datatype.VectorValue
lphy.core.model.datatype.lphy.core.model.datatype.package-info
lphy.core.parser
lphy.core.parser.lphy.core.parser.Command
lphy.core.parser.lphy.core.parser.DataClampingUtils
lphy.core.parser.lphy.core.parser.LPhyBaseErrorListener
lphy.core.parser.lphy.core.parser.LPhyListenerImpl
lphy.core.parser.lphy.core.parser.LPhyParserAction
lphy.core.parser.lphy.core.parser.LPhyParserDictionary
lphy.core.parser.lphy.core.parser.ParserSingleton
lphy.core.parser.lphy.core.parser.ParserUtils
lphy.core.parser.lphy.core.parser.REPL
lphy.core.parser.lphy.core.parser.Script
lphy.core.parser.lphy.core.parser.Var
lphy.core.parser.antlr
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhy.g4
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhy.interp
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhy.tokens
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhyBaseListener
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhyBaseVisitor
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhyLexer.interp
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhyLexer
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhyLexer.tokens
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhyListener
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhyParser
lphy.core.parser.antlr.lphy.core.parser.antlr.LPhyVisitor
lphy.core.parser.argument
lphy.core.parser.argument.lphy.core.parser.argument.Argument
lphy.core.parser.argument.lphy.core.parser.argument.ArgumentUtils
lphy.core.parser.argument.lphy.core.parser.argument.ArgumentValue
lphy.core.parser.function
lphy.core.parser.function.lphy.core.parser.function.ElementWise1Arg
lphy.core.parser.function.lphy.core.parser.function.ElementWise2Args
lphy.core.parser.function.lphy.core.parser.function.ExpressionNode1Arg
lphy.core.parser.function.lphy.core.parser.function.ExpressionNode2Args
lphy.core.parser.function.lphy.core.parser.function.ExpressionNodeWrapper
lphy.core.parser.function.lphy.core.parser.function.MapFunction
lphy.core.parser.function.lphy.core.parser.function.MethodCall
lphy.core.parser.graphicalmodel
lphy.core.parser.graphicalmodel.lphy.core.parser.graphicalmodel.ArrayCreator
lphy.core.parser.graphicalmodel.lphy.core.parser.graphicalmodel.GraphicalModel
lphy.core.parser.graphicalmodel.lphy.core.parser.graphicalmodel.GraphicalModelChangeListener
lphy.core.parser.graphicalmodel.lphy.core.parser.graphicalmodel.GraphicalModelListener
lphy.core.parser.graphicalmodel.lphy.core.parser.graphicalmodel.GraphicalModelNodeVisitor
lphy.core.parser.graphicalmodel.lphy.core.parser.graphicalmodel.GraphicalModelUtils
lphy.core.parser.graphicalmodel.lphy.core.parser.graphicalmodel.ValueCreator
lphy.core.simulator
lphy.core.simulator.lphy.core.simulator.NamedRandomValueSimulator
lphy.core.simulator.lphy.core.simulator.RandomUtils
lphy.core.simulator.lphy.core.simulator.SLPhy
lphy.core.simulator.lphy.core.simulator.Sampler
lphy.core.simulator.lphy.core.simulator.Simulate
lphy.core.simulator.lphy.core.simulator.SimulatorListener
lphy.core.spi
lphy.core.spi.lphy.core.spi.Extension
lphy.core.spi.lphy.core.spi.LPhyCoreImpl
lphy.core.spi.lphy.core.spi.LPhyCoreLoader
lphy.core.spi.lphy.core.spi.LPhyExtension
lphy.core.spi.lphy.core.spi.LoaderManager
lphy.core.spi.lphy.core.spi.ValueFormatterCoreImpl
lphy.core.spi.lphy.core.spi.ValueFormatterExtension
lphy.core.vectorization
lphy.core.vectorization.lphy.core.vectorization.CompoundDistribution
lphy.core.vectorization.lphy.core.vectorization.CompoundVector
lphy.core.vectorization.lphy.core.vectorization.CompoundVectorValue
lphy.core.vectorization.lphy.core.vectorization.IID
lphy.core.vectorization.lphy.core.vectorization.IndexedRandomVariable
lphy.core.vectorization.lphy.core.vectorization.VectorMatchUtils
lphy.core.vectorization.lphy.core.vectorization.VectorUtils
lphy.core.vectorization.lphy.core.vectorization.VectorizedDistribution
lphy.core.vectorization.lphy.core.vectorization.VectorizedFunction
lphy.core.vectorization.lphy.core.vectorization.VectorizedRandomVariable
lphy.core.vectorization.array
lphy.core.vectorization.array.lphy.core.vectorization.array.ArrayFunction
lphy.core.vectorization.array.lphy.core.vectorization.array.BooleanArray
lphy.core.vectorization.array.lphy.core.vectorization.array.DoubleArray
lphy.core.vectorization.array.lphy.core.vectorization.array.IntegerArray
lphy.core.vectorization.array.lphy.core.vectorization.array.NumberArray
lphy.core.vectorization.array.lphy.core.vectorization.array.StringArray
lphy.core.vectorization.operation
lphy.core.vectorization.operation.lphy.core.vectorization.operation.ElementsAt
lphy.core.vectorization.operation.lphy.core.vectorization.operation.ParameterNames
lphy.core.vectorization.operation.lphy.core.vectorization.operation.Range
lphy.core.vectorization.operation.lphy.core.vectorization.operation.RangeList
lphy.core.vectorization.operation.lphy.core.vectorization.operation.Slice
lphy.core.vectorization.operation.lphy.core.vectorization.operation.SliceDoubleArray
lphy.core.vectorization.operation.lphy.core.vectorization.operation.SliceValue
.module-info




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