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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.

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package io.github.mianalysis.mia.process.analysis;

import java.util.TreeMap;

public class TotalPathLengthCalculator implements SummaryCalculator {

    @Override
    public double calculate(double[] x, double[] y, double[] z, int[] f) {
        TreeMap steps = new InstantaneousStepSizeCalculator().calculate(x, y, z, f);

        double totalPathLength = 0;
        for (double value:steps.values()) totalPathLength += value;

        return totalPathLength;
        
    }    
}