• Home
• io.github.mianalysis
• mia-algorithms
• 1.6.2
• source code
• SpotIntensity.java

×

Project download

Many resources are needed to download a project. Please understand that we have to compensate our server costs. Thank you in advance.
Project price only 1 $

You can buy this project and download/modify it how often you want.

io.github.mianalysis.mia.process.analysis.SpotIntensity Maven / Gradle / Ivy

package io.github.mianalysis.mia.process.analysis;

//No need to use cumulative statistics, as this doesn't really make sense for a single spot.

import java.util.ArrayList;

import org.apache.commons.math3.stat.descriptive.moment.Mean;
import org.apache.commons.math3.stat.descriptive.moment.StandardDeviation;
import org.apache.commons.math3.stat.descriptive.rank.Max;
import org.apache.commons.math3.stat.descriptive.rank.Min;
import org.apache.commons.math3.stat.descriptive.summary.Sum;

import ij.process.ImageProcessor;
import io.github.mianalysis.mia.process.voxel.MidpointCircle;

public class SpotIntensity {
    private double[] int_arr;

    public SpotIntensity(ImageProcessor ipr, double x_in, double y_in, double r_in) {
        int im_w = ipr.getWidth();
        int im_h = ipr.getHeight();

        int x = (int) Math.round(x_in);
        int y = (int) Math.round(y_in);
        int r = (int) Math.round(r_in);

        MidpointCircle mpc = new MidpointCircle(r);
        int[] xx = mpc.getXCircleFill();
        int[] yy = mpc.getYCircleFill();

        ArrayList temp_al = new ArrayList();

        for (int j=0;j=0 & x+xx[j]=0 & y+yy[j]