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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.
/*
* "Concave" hulls by Glenn Hudson and Matt Duckham
*
* Source code downloaded from https://archive.md/l3Un5#selection-571.0-587.218 on 3rd November 2021.
*
* - This software is Copyright (C) 2008 Glenn Hudson released under Gnu Public License (GPL). Under
* GPL you are free to use, modify, and redistribute the software. Please acknowledge Glenn Hudson
* and Matt Duckham as the source of this software if you do use or adapt the code in further research
* or other work. For full details of GPL see http://www.gnu.org/licenses/gpl-3.0.txt.
* - This software comes with no warranty of any kind, expressed or implied.
*
* A paper with full details of the characteristic hulls algorithm is published in Pattern Recognition.
* Duckham, M., Kulik, L., Worboys, M.F., Galton, A. (2008) Efficient generation of simple polygons for
* characterizing the shape of a set of points in the plane. Pattern Recognition v41, 3224-3236
*
* The software was developed by Glenn Hudson while working with me as an RA. The characteristic shapes
* algorithm is collaborative work between Matt Duckham, Lars Kulik, Antony Galton, and Mike Worboys.
*
*/
package signalprocesser.voronoi.statusstructure.binarysearchtreeimpl;
import signalprocesser.voronoi.eventqueue.VSiteEvent;
import signalprocesser.voronoi.statusstructure.VLinkedNode;
public class VLeafNode extends VLinkedNode implements VNode {
/* ***************************************************** */
// Variables
public int id = BSTStatusStructure.uniqueid++;
protected VInternalNode parent;
/* ***************************************************** */
// Constructor
protected VLeafNode() { }
public VLeafNode(VSiteEvent _siteevent) {
super( _siteevent );
}
/* ***************************************************** */
// Methods
public VInternalNode getParent() { return parent; }
public void setParent(VInternalNode _parent) {
this.parent = _parent;
}
public boolean isLeafNode() { return true; }
public boolean isInternalNode() { return false; }
public VLeafNode cloneLeafNode() {
VLeafNode clone = new VLeafNode(this.siteevent);
// DO NOT DUPLICATE prev/next values
// DO NOT DUPLICATE circle events???? (?!)
return clone;
}
public VInternalNode getFirstCommonParent(VLeafNode othernode) {
VInternalNode parent1 = parent;
VInternalNode parent2 = othernode.parent;
int depth1 = parent.getDepth();
int depth2 = othernode.parent.getDepth();
// Go up until at equal depths
if ( depth1 > depth2 ) {
do {
depth1--;
parent1 = parent1.getParent();
} while ( depth1 > depth2 );
} else if ( depth2 > depth1 ) {
do {
depth2--;
parent2 = parent2.getParent();
} while ( depth2 > depth1 );
}
// Find common parent from common depth
while ( parent1!=parent2 ) {
parent1 = parent1.getParent();
parent2 = parent2.getParent();
}
// Return common parent
return parent1;
}
/* ***************************************************** */
// To String Method
public String toString() {
return "VLeafNode" + id + " (" + siteevent + ")";
}
/* ***************************************************** */
}