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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.
package io.github.mianalysis.mia.process.activecontour.physicalmodel;
public class Vertex {
public static int TOPLEFT = 1;
public static int BOTTOMLEFT = 2;
public static int TOPRIGHT = 3;
public static int BOTTOMRIGHT = 4;
private Vertex top_neighbour = null;
private Vertex bottom_neighbour = null;
private Vertex left_neighbour = null;
private Vertex right_neighbour = null;
private boolean fixed_x = false;
private boolean fixed_y = false;
private double x;
private double y;
private double energy = 0;
private int ID; // Specific to that node
private int special = 0; //No special state
private double distanceMoved = Double.MAX_VALUE; // Condition that can be used to check if the Vertex moved last time
public Vertex(double x, double y) {
this.x = x;
this.y = y;
this.ID = 0;
}
public Vertex(double x, double y, int ID) {
this.x = x;
this.y = y;
this.ID = ID;
}
public void setX(double x) {
if (!fixed_x) this.x = x;
}
public void setY(double y) {
if (!fixed_y) this.y = y;
}
public void setXY(double x, double y) {
if (!fixed_x) this.x = x;
if (!fixed_y) this.y = y;
}
public int getID() {
return ID;
}
public void setID(int ID) {
this.ID = ID;
}
public void setFixedX(boolean fixed_x) {
this.fixed_x = fixed_x;
}
public void setFixedY(boolean fixed_y) {
this.fixed_y = fixed_y;
}
public void setTopNeighbour(Vertex top_neighbour) {
this.top_neighbour = top_neighbour;
}
public void setBottomNeighbour(Vertex bottom_neighbour) {
this.bottom_neighbour = bottom_neighbour;
}
public void setLeftNeighbour(Vertex left_neighbour) {
this.left_neighbour = left_neighbour;
}
public void setRightNeighbour(Vertex right_neighbour) {
this.right_neighbour = right_neighbour;
}
public void setSpecial(int special) {
this.special = special;
}
public double getX() {
return x;
}
public double getY() {
return y;
}
public Vertex getTopNeighbour() {
return top_neighbour;
}
public Vertex getBottomNeighbour() {
return bottom_neighbour;
}
public Vertex getLeftNeighbour() {
return left_neighbour;
}
public Vertex getRightNeighbour() {
return right_neighbour;
}
public boolean getFixedX() {
return fixed_x;
}
public boolean getFixedY() {
return fixed_y;
}
public int getSpecial() {
return special;
}
public boolean isSpecial() {
boolean is_special = false;
if (special != 0) {
is_special = true;
}
return is_special;
}
public double getDistanceMoved() {
return distanceMoved;
}
public void setDistanceMoved(double x1, double y1, double x2, double y2) {
this.distanceMoved = Math.sqrt((x2-x1)*(x2-x1)+(y2-y1)*(y2-y1));
}
public void setDistanceMoved(double distanceMoved) {
this.distanceMoved = distanceMoved;
}
public double getEnergy() {
return energy;
}
public void setEnergy(double energy) {
this.energy = energy;
}
}