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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.
package io.github.mianalysis.mia.process.analysis;
import java.util.TreeMap;
/**
* Created by Stephen on 15/04/2017.
*/
public class CumulativePathLengthCalculator implements SpatialCalculator {
public TreeMap calculate(double[] x, double[] y, double[] z, int[] f) {
TreeMap steps = new InstantaneousStepSizeCalculator().calculate(x,y,z,f);
TreeMap dist = new TreeMap<>();
dist.put(f[0],0d);
for (int i=1;i