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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.

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package io.github.mianalysis.mia.macro;

import org.scijava.plugin.SciJavaPlugin;

import ij.macro.ExtensionDescriptor;
import ij.macro.MacroExtension;
import io.github.mianalysis.mia.module.Modules;
import io.github.mianalysis.mia.object.Workspace;

public abstract class MacroOperation extends ExtensionDescriptor implements SciJavaPlugin {
    // Using the same numbering as MacroExtension
    protected static int ARG_STRING = 1;
    protected static int ARG_NUMBER = 2;
    protected static int ARG_ARRAY = 4;
    protected static int ARG_OUTPUT = 16;
    protected static int ARG_OPTIONAL = 32;

    public MacroOperation(MacroExtension theHandler) {
        super("", null, theHandler);
        name = getName();
        argTypes = getArgumentTypes();
    }

    public String getName() {
        return this.getClass().getSimpleName();
    }
    
    public abstract int[] getArgumentTypes();
    public abstract String action(Object[] objects, Workspace workspace, Modules modules);
    public abstract String getArgumentsDescription();
    public abstract String getVersionNumber();
    public abstract String getDescription();

}