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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.

Files of the artifact mia-core version 1.6.9 from the group io.github.mianalysis.

Artifact mia-core
Group io.github.mianalysis
Version 1.6.9
Last update 12. October 2024
Tags: measured objects workflows datasets enabled content default high filtered related provides transformed which image modular batch assembling allowing analysis easy modularimageanalysis framework plugin imagej detected processing object
Organization University of Bristol
URL https://github.com/mianalysis/mia
License GNU General Public License v3+
Dependencies amount 4
Dependencies mia-algorithms, poi, poi-ooxml-lite, poi-ooxml,
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Source code of mia-core version 1.6.9

META-INF
META-INF.META-INF.MANIFEST.MF
META-INF.maven.io.github.mianalysis.mia-core
META-INF.maven.io.github.mianalysis.mia-core.META-INF.maven.io.github.mianalysis.mia-core.pom.properties
META-INF.maven.io.github.mianalysis.mia-core.META-INF.maven.io.github.mianalysis.mia-core.pom.xml
io.github.mianalysis.mia
io.github.mianalysis.mia.io.github.mianalysis.mia.MIA
io.github.mianalysis.mia.io.github.mianalysis.mia.MIAHeadless
io.github.mianalysis.mia.macro
io.github.mianalysis.mia.macro.io.github.mianalysis.mia.macro.EnableExtensions
io.github.mianalysis.mia.macro.io.github.mianalysis.mia.macro.MacroAutocomplete
io.github.mianalysis.mia.macro.io.github.mianalysis.mia.macro.MacroHandler
io.github.mianalysis.mia.macro.io.github.mianalysis.mia.macro.MacroOperation
io.github.mianalysis.mia.module
io.github.mianalysis.mia.module.io.github.mianalysis.mia.module.AvailableModules
io.github.mianalysis.mia.module.io.github.mianalysis.mia.module.Categories
io.github.mianalysis.mia.module.io.github.mianalysis.mia.module.Category
io.github.mianalysis.mia.module.io.github.mianalysis.mia.module.IL2Support
io.github.mianalysis.mia.module.io.github.mianalysis.mia.module.Module
io.github.mianalysis.mia.module.io.github.mianalysis.mia.module.Modules
io.github.mianalysis.mia.module.core
io.github.mianalysis.mia.module.core.io.github.mianalysis.mia.module.core.InputControl
io.github.mianalysis.mia.module.core.io.github.mianalysis.mia.module.core.OutputControl
io.github.mianalysis.mia.module.lostandfound
io.github.mianalysis.mia.module.lostandfound.io.github.mianalysis.mia.module.lostandfound.LostAndFound
io.github.mianalysis.mia.module.lostandfound.io.github.mianalysis.mia.module.lostandfound.LostAndFoundItem
io.github.mianalysis.mia.module.objects.detect.extensions
io.github.mianalysis.mia.module.objects.detect.extensions.io.github.mianalysis.mia.module.objects.detect.extensions.ManualExtension
io.github.mianalysis.mia.module.objects.detect.extensions.io.github.mianalysis.mia.module.objects.detect.extensions.ManualExtensionDependencies
io.github.mianalysis.mia.module.objects.detect.extensions.io.github.mianalysis.mia.module.objects.detect.extensions.ManualExtensionDependency
io.github.mianalysis.mia.module.objects.filter
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.AbstractNumericObjectFilter
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.AbstractObjectFilter
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.AbstractTextObjectFilter
io.github.mianalysis.mia.module.script
io.github.mianalysis.mia.module.script.io.github.mianalysis.mia.module.script.AbstractMacroRunner
io.github.mianalysis.mia.module.script.io.github.mianalysis.mia.module.script.RunMacro
io.github.mianalysis.mia.module.script.io.github.mianalysis.mia.module.script.RunMacroOnObjects
io.github.mianalysis.mia.module.system
io.github.mianalysis.mia.module.system.io.github.mianalysis.mia.module.system.GUISeparator
io.github.mianalysis.mia.module.system.io.github.mianalysis.mia.module.system.GlobalVariables
io.github.mianalysis.mia.module.workflow
io.github.mianalysis.mia.module.workflow.io.github.mianalysis.mia.module.workflow.AbstractWorkspaceHandler
io.github.mianalysis.mia.module.workflow.io.github.mianalysis.mia.module.workflow.AddPause
io.github.mianalysis.mia.module.workflow.io.github.mianalysis.mia.module.workflow.FixedTextCondition
io.github.mianalysis.mia.module.workflow.io.github.mianalysis.mia.module.workflow.GUICondition
io.github.mianalysis.mia.module.workflow.io.github.mianalysis.mia.module.workflow.ModuleIsEnabled
io.github.mianalysis.mia.module.workflow.io.github.mianalysis.mia.module.workflow.WorkflowHandling
io.github.mianalysis.mia.moduledependencies
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.Dependencies
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.Dependency
io.github.mianalysis.mia.object
io.github.mianalysis.mia.object.io.github.mianalysis.mia.object.CoreDependency
io.github.mianalysis.mia.object.io.github.mianalysis.mia.object.ImgPlusCoordinateIterator
io.github.mianalysis.mia.object.io.github.mianalysis.mia.object.Measurement
io.github.mianalysis.mia.object.io.github.mianalysis.mia.object.Obj
io.github.mianalysis.mia.object.io.github.mianalysis.mia.object.ObjMetadata
io.github.mianalysis.mia.object.io.github.mianalysis.mia.object.Objs
io.github.mianalysis.mia.object.io.github.mianalysis.mia.object.VolumeTypesInterface
io.github.mianalysis.mia.object.io.github.mianalysis.mia.object.Workspace
io.github.mianalysis.mia.object.io.github.mianalysis.mia.object.Workspaces
io.github.mianalysis.mia.object.coordinates
io.github.mianalysis.mia.object.coordinates.io.github.mianalysis.mia.object.coordinates.PointPair
io.github.mianalysis.mia.object.coordinates.volume
io.github.mianalysis.mia.object.coordinates.volume.io.github.mianalysis.mia.object.coordinates.volume.Volume
io.github.mianalysis.mia.object.image
io.github.mianalysis.mia.object.image.io.github.mianalysis.mia.object.image.Image
io.github.mianalysis.mia.object.image.io.github.mianalysis.mia.object.image.ImageFactory
io.github.mianalysis.mia.object.image.io.github.mianalysis.mia.object.image.ImagePlusImage
io.github.mianalysis.mia.object.image.io.github.mianalysis.mia.object.image.ImageType
io.github.mianalysis.mia.object.image.io.github.mianalysis.mia.object.image.ImgPlusImage
io.github.mianalysis.mia.object.image.io.github.mianalysis.mia.object.image.ImgPlusTools
io.github.mianalysis.mia.object.image.renderer
io.github.mianalysis.mia.object.image.renderer.io.github.mianalysis.mia.object.image.renderer.ImagePlusRenderer
io.github.mianalysis.mia.object.image.renderer.io.github.mianalysis.mia.object.image.renderer.ImageRenderer
io.github.mianalysis.mia.object.image.renderer.io.github.mianalysis.mia.object.image.renderer.ImgPlusRenderer
io.github.mianalysis.mia.object.imagej
io.github.mianalysis.mia.object.imagej.io.github.mianalysis.mia.object.imagej.LUTs
io.github.mianalysis.mia.object.measurements
io.github.mianalysis.mia.object.measurements.io.github.mianalysis.mia.object.measurements.ChildCountMeasurement
io.github.mianalysis.mia.object.measurements.io.github.mianalysis.mia.object.measurements.ParentIDMeasurement
io.github.mianalysis.mia.object.measurements.io.github.mianalysis.mia.object.measurements.PartnerCountMeasurement
io.github.mianalysis.mia.object.metadata
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.CV1000FilenameExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.CV1000FoldernameExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.CV7000FilenameExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.FileExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.GenericExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.IncuCyteLongFilenameExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.IncuCyteShortFilenameExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.KeywordExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.Metadata
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.NameExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.OperaFileExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.OperaFilenameExtractor
io.github.mianalysis.mia.object.metadata.io.github.mianalysis.mia.object.metadata.OperaFoldernameExtractor
io.github.mianalysis.mia.object.parameters
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.AdjustParameters
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.BooleanP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ChildObjectsP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ChoiceP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.FileFolderPathP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.FilePathP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.FolderPathP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ImageMeasurementP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.InputImageP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.InputObjectsP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.MetadataItemP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ModuleP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ObjMeasurementSelectorP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ObjectMeasurementP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ObjectMetadataP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.OutputImageP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ParameterGroup
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ParameterState
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.Parameters
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.ParentObjectsP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.PartnerObjectsP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.RemovableInputImageP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.RemovedImageP
io.github.mianalysis.mia.object.parameters.io.github.mianalysis.mia.object.parameters.SeparatorP
io.github.mianalysis.mia.object.parameters.abstrakt
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.BooleanType
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.CaretReporter
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.ChoiceType
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.FileFolderType
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.ImageNamesType
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.ObjectNamesType
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.Parameter
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.ParameterControl
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.TextSwitchableParameter
io.github.mianalysis.mia.object.parameters.abstrakt.io.github.mianalysis.mia.object.parameters.abstrakt.TextType
io.github.mianalysis.mia.object.parameters.choiceinterfaces
io.github.mianalysis.mia.object.parameters.choiceinterfaces.io.github.mianalysis.mia.object.parameters.choiceinterfaces.BinaryLogicInterface
io.github.mianalysis.mia.object.parameters.choiceinterfaces.io.github.mianalysis.mia.object.parameters.choiceinterfaces.ConnectivityInterface
io.github.mianalysis.mia.object.parameters.choiceinterfaces.io.github.mianalysis.mia.object.parameters.choiceinterfaces.SpatialUnitsInterface
io.github.mianalysis.mia.object.parameters.objects
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.InputBranchObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.InputClusterObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.InputJunctionObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.InputLoopObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.InputSkeletonObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.InputTrackObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.OutputBranchObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.OutputClusterObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.OutputJunctionObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.OutputLoopObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.OutputObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.OutputSkeletonObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.OutputTrackObjectsP
io.github.mianalysis.mia.object.parameters.objects.io.github.mianalysis.mia.object.parameters.objects.RemovedObjectsP
io.github.mianalysis.mia.object.parameters.text
io.github.mianalysis.mia.object.parameters.text.io.github.mianalysis.mia.object.parameters.text.DoubleP
io.github.mianalysis.mia.object.parameters.text.io.github.mianalysis.mia.object.parameters.text.IntegerP
io.github.mianalysis.mia.object.parameters.text.io.github.mianalysis.mia.object.parameters.text.MessageP
io.github.mianalysis.mia.object.parameters.text.io.github.mianalysis.mia.object.parameters.text.SeriesListSelectorP
io.github.mianalysis.mia.object.parameters.text.io.github.mianalysis.mia.object.parameters.text.SeriesSingleSelectorP
io.github.mianalysis.mia.object.parameters.text.io.github.mianalysis.mia.object.parameters.text.StringP
io.github.mianalysis.mia.object.parameters.text.io.github.mianalysis.mia.object.parameters.text.TextAreaP
io.github.mianalysis.mia.object.refs
io.github.mianalysis.mia.object.refs.io.github.mianalysis.mia.object.refs.ImageMeasurementRef
io.github.mianalysis.mia.object.refs.io.github.mianalysis.mia.object.refs.MetadataRef
io.github.mianalysis.mia.object.refs.io.github.mianalysis.mia.object.refs.ObjMeasurementRef
io.github.mianalysis.mia.object.refs.io.github.mianalysis.mia.object.refs.ObjMetadataRef
io.github.mianalysis.mia.object.refs.io.github.mianalysis.mia.object.refs.ParentChildRef
io.github.mianalysis.mia.object.refs.io.github.mianalysis.mia.object.refs.PartnerRef
io.github.mianalysis.mia.object.refs.abstrakt
io.github.mianalysis.mia.object.refs.abstrakt.io.github.mianalysis.mia.object.refs.abstrakt.ExportableRef
io.github.mianalysis.mia.object.refs.abstrakt.io.github.mianalysis.mia.object.refs.abstrakt.Ref
io.github.mianalysis.mia.object.refs.abstrakt.io.github.mianalysis.mia.object.refs.abstrakt.SpreadsheetWriter
io.github.mianalysis.mia.object.refs.abstrakt.io.github.mianalysis.mia.object.refs.abstrakt.SummaryRef
io.github.mianalysis.mia.object.refs.collections
io.github.mianalysis.mia.object.refs.collections.io.github.mianalysis.mia.object.refs.collections.ImageMeasurementRefs
io.github.mianalysis.mia.object.refs.collections.io.github.mianalysis.mia.object.refs.collections.MetadataRefs
io.github.mianalysis.mia.object.refs.collections.io.github.mianalysis.mia.object.refs.collections.ObjMeasurementRefs
io.github.mianalysis.mia.object.refs.collections.io.github.mianalysis.mia.object.refs.collections.ObjMetadataRefs
io.github.mianalysis.mia.object.refs.collections.io.github.mianalysis.mia.object.refs.collections.ParentChildRefs
io.github.mianalysis.mia.object.refs.collections.io.github.mianalysis.mia.object.refs.collections.PartnerRefs
io.github.mianalysis.mia.object.refs.collections.io.github.mianalysis.mia.object.refs.collections.Refs
io.github.mianalysis.mia.object.system
io.github.mianalysis.mia.object.system.io.github.mianalysis.mia.object.system.Colours
io.github.mianalysis.mia.object.system.io.github.mianalysis.mia.object.system.Preferences
io.github.mianalysis.mia.object.system.io.github.mianalysis.mia.object.system.Status
io.github.mianalysis.mia.object.units
io.github.mianalysis.mia.object.units.io.github.mianalysis.mia.object.units.SpatialUnit
io.github.mianalysis.mia.object.units.io.github.mianalysis.mia.object.units.TemporalUnit
io.github.mianalysis.mia.process
io.github.mianalysis.mia.process.io.github.mianalysis.mia.process.ClassHunter
io.github.mianalysis.mia.process.io.github.mianalysis.mia.process.ColourFactory
io.github.mianalysis.mia.process.io.github.mianalysis.mia.process.DependencyValidator
io.github.mianalysis.mia.process.io.github.mianalysis.mia.process.LabelFactory
io.github.mianalysis.mia.process.io.github.mianalysis.mia.process.ModuleSearcher
io.github.mianalysis.mia.process.io.github.mianalysis.mia.process.ParameterControlFactory
io.github.mianalysis.mia.process.analysishandling
io.github.mianalysis.mia.process.analysishandling.io.github.mianalysis.mia.process.analysishandling.AnalysisReader
io.github.mianalysis.mia.process.analysishandling.io.github.mianalysis.mia.process.analysishandling.AnalysisRunner
io.github.mianalysis.mia.process.analysishandling.io.github.mianalysis.mia.process.analysishandling.AnalysisTester
io.github.mianalysis.mia.process.analysishandling.io.github.mianalysis.mia.process.analysishandling.AnalysisWriter
io.github.mianalysis.mia.process.analysishandling.legacyreaders
io.github.mianalysis.mia.process.analysishandling.legacyreaders.io.github.mianalysis.mia.process.analysishandling.legacyreaders.AnalysisReader_0p10p0_0p15p0
io.github.mianalysis.mia.process.analysishandling.legacyreaders.io.github.mianalysis.mia.process.analysishandling.legacyreaders.AnalysisReader_Pre_0p10p0
io.github.mianalysis.mia.process.coordinates
io.github.mianalysis.mia.process.coordinates.io.github.mianalysis.mia.process.coordinates.PointSurfaceSeparatorCalculator
io.github.mianalysis.mia.process.coordinates.io.github.mianalysis.mia.process.coordinates.SurfaceSeparationCalculator
io.github.mianalysis.mia.process.coordinates.io.github.mianalysis.mia.process.coordinates.ZInterpolator
io.github.mianalysis.mia.process.exceptions
io.github.mianalysis.mia.process.exceptions.io.github.mianalysis.mia.process.exceptions.IntegerOverflowException
io.github.mianalysis.mia.process.exceptions.io.github.mianalysis.mia.process.exceptions.LongOverflowException
io.github.mianalysis.mia.process.exporting
io.github.mianalysis.mia.process.exporting.io.github.mianalysis.mia.process.exporting.Exporter
io.github.mianalysis.mia.process.exporting.io.github.mianalysis.mia.process.exporting.XLSXExporter
io.github.mianalysis.mia.process.logging
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.BasicLogRenderer
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.ConsoleRenderer
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.HeadlessRenderer
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.IJ1Renderer
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.ImageJGUIRenderer
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.Log
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.LogHistory
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.LogRenderer
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.ProgressBar
io.github.mianalysis.mia.process.logging.io.github.mianalysis.mia.process.logging.StatusPanelRenderer
io.github.mianalysis.mia.process.system
io.github.mianalysis.mia.process.system.io.github.mianalysis.mia.process.system.ExtensionMatchesString
io.github.mianalysis.mia.process.system.io.github.mianalysis.mia.process.system.FileCondition
io.github.mianalysis.mia.process.system.io.github.mianalysis.mia.process.system.FileCrawler
io.github.mianalysis.mia.process.system.io.github.mianalysis.mia.process.system.FileTools
io.github.mianalysis.mia.process.system.io.github.mianalysis.mia.process.system.Folder
io.github.mianalysis.mia.process.system.io.github.mianalysis.mia.process.system.NameContainsPattern
io.github.mianalysis.mia.process.system.io.github.mianalysis.mia.process.system.NameContainsString
io.github.mianalysis.mia.process.system.io.github.mianalysis.mia.process.system.ParentContainsString
.plugins.config
.project.properties




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