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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.

Files of the artifact mia-modules version 1.6.3 from the group io.github.mianalysis.

Artifact mia-modules
Group io.github.mianalysis
Version 1.6.3
Last update 25. July 2024
Tags: measured objects workflows datasets enabled content default high filtered related provides transformed which image modular batch assembling allowing analysis easy modularimageanalysis framework plugin imagej detected processing object
Organization University of Bristol
URL https://github.com/mianalysis/mia
License GNU General Public License v3+
Dependencies amount 1
Dependencies mia-core,
There are maybe transitive dependencies!
There is a newer version: 1.6.12
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Source code of mia-modules version 1.6.3

META-INF
META-INF.META-INF.MANIFEST.MF
META-INF.maven.io.github.mianalysis.mia-modules
META-INF.maven.io.github.mianalysis.mia-modules.META-INF.maven.io.github.mianalysis.mia-modules.pom.properties
META-INF.maven.io.github.mianalysis.mia-modules.META-INF.maven.io.github.mianalysis.mia-modules.pom.xml
io.github.mianalysis.mia.lostandfound.core
io.github.mianalysis.mia.lostandfound.core.io.github.mianalysis.mia.lostandfound.core.InputControlLostFound
io.github.mianalysis.mia.lostandfound.images.process
io.github.mianalysis.mia.lostandfound.images.process.io.github.mianalysis.mia.lostandfound.images.process.FilterImageLostFound
io.github.mianalysis.mia.lostandfound.images.process.io.github.mianalysis.mia.lostandfound.images.process.ImageMathLostFound
io.github.mianalysis.mia.lostandfound.images.process.io.github.mianalysis.mia.lostandfound.images.process.WekaPixelClassificationLostFound
io.github.mianalysis.mia.lostandfound.images.process.binary
io.github.mianalysis.mia.lostandfound.images.process.binary.io.github.mianalysis.mia.lostandfound.images.process.binary.BinaryOperationsLostFound
io.github.mianalysis.mia.lostandfound.images.process.binary.io.github.mianalysis.mia.lostandfound.images.process.binary.DistanceMapLostFound
io.github.mianalysis.mia.lostandfound.images.process.binary.io.github.mianalysis.mia.lostandfound.images.process.binary.ExtendedMinimaLostFound
io.github.mianalysis.mia.lostandfound.images.process.binary.io.github.mianalysis.mia.lostandfound.images.process.binary.FillHolesByVolumeLostFound
io.github.mianalysis.mia.lostandfound.images.process.threshold
io.github.mianalysis.mia.lostandfound.images.process.threshold.io.github.mianalysis.mia.lostandfound.images.process.threshold.LocalThresholdLostFound
io.github.mianalysis.mia.lostandfound.images.process.threshold.io.github.mianalysis.mia.lostandfound.images.process.threshold.ThresholdImageLostFound
io.github.mianalysis.mia.lostandfound.images.transform
io.github.mianalysis.mia.lostandfound.images.transform.io.github.mianalysis.mia.lostandfound.images.transform.ExpandShrinkObjectsLostFound
io.github.mianalysis.mia.lostandfound.images.transform.io.github.mianalysis.mia.lostandfound.images.transform.FocusStackGlobalLostFound
io.github.mianalysis.mia.lostandfound.images.transform.io.github.mianalysis.mia.lostandfound.images.transform.FocusStackLocalLostFound
io.github.mianalysis.mia.lostandfound.images.transform.registration
io.github.mianalysis.mia.lostandfound.images.transform.registration.io.github.mianalysis.mia.lostandfound.images.transform.registration.AffineBlockMatchingLostFound
io.github.mianalysis.mia.lostandfound.images.transform.registration.io.github.mianalysis.mia.lostandfound.images.transform.registration.AffineMOPSLostFound
io.github.mianalysis.mia.lostandfound.images.transform.registration.io.github.mianalysis.mia.lostandfound.images.transform.registration.AffineSIFTLostFound
io.github.mianalysis.mia.lostandfound.images.transform.registration.io.github.mianalysis.mia.lostandfound.images.transform.registration.UnwarpAutomaticLostFound
io.github.mianalysis.mia.lostandfound.inputoutput
io.github.mianalysis.mia.lostandfound.inputoutput.io.github.mianalysis.mia.lostandfound.inputoutput.ImageLoaderLostFound
io.github.mianalysis.mia.lostandfound.inputoutput.io.github.mianalysis.mia.lostandfound.inputoutput.MetadataExtractorLostFound
io.github.mianalysis.mia.lostandfound.inputoutput.io.github.mianalysis.mia.lostandfound.inputoutput.ObjectLoaderLostFound
io.github.mianalysis.mia.lostandfound.objects.convert
io.github.mianalysis.mia.lostandfound.objects.convert.io.github.mianalysis.mia.lostandfound.objects.convert.ConvertImageToObjectsLostFound
io.github.mianalysis.mia.lostandfound.objects.convert.io.github.mianalysis.mia.lostandfound.objects.convert.ConvertObjectsToImageLostFound
io.github.mianalysis.mia.lostandfound.objects.convert.io.github.mianalysis.mia.lostandfound.objects.convert.CreateDistanceMapLostFound
io.github.mianalysis.mia.lostandfound.objects.detect
io.github.mianalysis.mia.lostandfound.objects.detect.io.github.mianalysis.mia.lostandfound.objects.detect.CircleHoughDetectionLostFound
io.github.mianalysis.mia.lostandfound.objects.filter
io.github.mianalysis.mia.lostandfound.objects.filter.io.github.mianalysis.mia.lostandfound.objects.filter.FilterByMeasurementExtremesLostFound
io.github.mianalysis.mia.lostandfound.objects.measure.intensity
io.github.mianalysis.mia.lostandfound.objects.measure.intensity.io.github.mianalysis.mia.lostandfound.objects.measure.intensity.MeasureObjectIntensityLostFound
io.github.mianalysis.mia.lostandfound.objects.measure.miscellaneous
io.github.mianalysis.mia.lostandfound.objects.measure.miscellaneous.io.github.mianalysis.mia.lostandfound.objects.measure.miscellaneous.ReplaceMeasurementValueLostFound
io.github.mianalysis.mia.lostandfound.objects.measure.spatial
io.github.mianalysis.mia.lostandfound.objects.measure.spatial.io.github.mianalysis.mia.lostandfound.objects.measure.spatial.CalculateNearestNeighbourLostFound
io.github.mianalysis.mia.lostandfound.objects.measure.spatial.io.github.mianalysis.mia.lostandfound.objects.measure.spatial.MeasureObjectCurvatureLostFound
io.github.mianalysis.mia.lostandfound.objects.measure.spatial.io.github.mianalysis.mia.lostandfound.objects.measure.spatial.MeasureObjectShapeLostFound
io.github.mianalysis.mia.lostandfound.objects.process
io.github.mianalysis.mia.lostandfound.objects.process.io.github.mianalysis.mia.lostandfound.objects.process.CreateDistanceBandsLostFound
io.github.mianalysis.mia.lostandfound.objects.process.io.github.mianalysis.mia.lostandfound.objects.process.CreateSkeletonLostFound
io.github.mianalysis.mia.lostandfound.objects.process.io.github.mianalysis.mia.lostandfound.objects.process.FitActiveContoursLostFound
io.github.mianalysis.mia.lostandfound.objects.process.io.github.mianalysis.mia.lostandfound.objects.process.FitConvexHull2DLostFound
io.github.mianalysis.mia.lostandfound.objects.process.io.github.mianalysis.mia.lostandfound.objects.process.FitGaussian2DLostFound
io.github.mianalysis.mia.lostandfound.objects.process.io.github.mianalysis.mia.lostandfound.objects.process.GetObjectLocalRegionLostFound
io.github.mianalysis.mia.lostandfound.objects.relate
io.github.mianalysis.mia.lostandfound.objects.relate.io.github.mianalysis.mia.lostandfound.objects.relate.RelateManyToOneLostFound
io.github.mianalysis.mia.lostandfound.objects.relate.io.github.mianalysis.mia.lostandfound.objects.relate.TrackObjectsLostFound
io.github.mianalysis.mia.lostandfound.script
io.github.mianalysis.mia.lostandfound.script.io.github.mianalysis.mia.lostandfound.script.RunMacroLostFound
io.github.mianalysis.mia.lostandfound.script.io.github.mianalysis.mia.lostandfound.script.RunSingleCommandLostFound
io.github.mianalysis.mia.lostandfound.system
io.github.mianalysis.mia.lostandfound.system.io.github.mianalysis.mia.lostandfound.system.GUISeparatorLostFound
io.github.mianalysis.mia.lostandfound.system.io.github.mianalysis.mia.lostandfound.system.GlobalVariablesLostFound
io.github.mianalysis.mia.lostandfound.system.io.github.mianalysis.mia.lostandfound.system.RemoveImagesLostFound
io.github.mianalysis.mia.lostandfound.visualise
io.github.mianalysis.mia.lostandfound.visualise.io.github.mianalysis.mia.lostandfound.visualise.PlotMeasurementsScatterLostFound
io.github.mianalysis.mia.lostandfound.workflow
io.github.mianalysis.mia.lostandfound.workflow.io.github.mianalysis.mia.lostandfound.workflow.WorkflowHandlingLostFound
io.github.mianalysis.mia.module.images.configure
io.github.mianalysis.mia.module.images.configure.io.github.mianalysis.mia.module.images.configure.SetDisplayRange
io.github.mianalysis.mia.module.images.configure.io.github.mianalysis.mia.module.images.configure.SetLookupTable
io.github.mianalysis.mia.module.images.configure.io.github.mianalysis.mia.module.images.configure.SetSpatialCalibration
io.github.mianalysis.mia.module.images.measure
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.Create2DIntensityHistogram
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.ImageMeasurementCalculator
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.MeasureGiniCoefficient
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.MeasureGreyscaleKFunction
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.MeasureImageColocalisation
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.MeasureImageDimensions
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.MeasureImageIntensity
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.MeasureImageIntensityOrientation
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.MeasureImageTexture
io.github.mianalysis.mia.module.images.measure.io.github.mianalysis.mia.module.images.measure.ReadTextFromImage
io.github.mianalysis.mia.module.images.process
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.ApplyCLAHE
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.BleachingCorrection
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.ColourDeconvolution
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.CombingCorrection
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.FilterImage
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.ImageCalculator
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.ImageMath
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.ImageTypeConverter
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.InvertIntensity
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.ManuallyEditImage
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.NormaliseIntensity
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.WekaPixelClassification
io.github.mianalysis.mia.module.images.process.io.github.mianalysis.mia.module.images.process.WhiteBalanceCorrection
io.github.mianalysis.mia.module.images.process.binary
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.BinaryOperations
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.BinaryOperations2D
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.DilateErode
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.DistanceMap
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.ExtendedMinima
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.FillHoles
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.FillHolesByVolume
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.FixSkeletonBreaks
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.Skeletonise
io.github.mianalysis.mia.module.images.process.binary.io.github.mianalysis.mia.module.images.process.binary.Watershed
io.github.mianalysis.mia.module.images.process.threshold
io.github.mianalysis.mia.module.images.process.threshold.io.github.mianalysis.mia.module.images.process.threshold.GlobalAutoThreshold
io.github.mianalysis.mia.module.images.process.threshold.io.github.mianalysis.mia.module.images.process.threshold.LocalAutoThreshold
io.github.mianalysis.mia.module.images.process.threshold.io.github.mianalysis.mia.module.images.process.threshold.ManualThreshold
io.github.mianalysis.mia.module.images.process.threshold.io.github.mianalysis.mia.module.images.process.threshold.ThresholdImage
io.github.mianalysis.mia.module.images.transform
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.ChannelExtractor
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.ConcatenateStacks
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.ConcatenateStacks2
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.Convert3DStack
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.CropImage
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.ExtractSubstack
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.FlipStack
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.FocusStackGlobal
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.FocusStackLocal
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.InterpolateZAxis
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.MergeChannels
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.ProjectImage
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.ReplaceImage
io.github.mianalysis.mia.module.images.transform.io.github.mianalysis.mia.module.images.transform.ScaleStack
io.github.mianalysis.mia.module.images.transform.registration
io.github.mianalysis.mia.module.images.transform.registration.io.github.mianalysis.mia.module.images.transform.registration.AffineBlockMatching
io.github.mianalysis.mia.module.images.transform.registration.io.github.mianalysis.mia.module.images.transform.registration.AffineCentroids
io.github.mianalysis.mia.module.images.transform.registration.io.github.mianalysis.mia.module.images.transform.registration.AffineFixedTransform
io.github.mianalysis.mia.module.images.transform.registration.io.github.mianalysis.mia.module.images.transform.registration.AffineMOPS
io.github.mianalysis.mia.module.images.transform.registration.io.github.mianalysis.mia.module.images.transform.registration.AffineSIFT
io.github.mianalysis.mia.module.images.transform.registration.io.github.mianalysis.mia.module.images.transform.registration.UnwarpAutomatic
io.github.mianalysis.mia.module.images.transform.registration.abstrakt
io.github.mianalysis.mia.module.images.transform.registration.abstrakt.io.github.mianalysis.mia.module.images.transform.registration.abstrakt.AbstractAffineRegistration
io.github.mianalysis.mia.module.images.transform.registration.abstrakt.io.github.mianalysis.mia.module.images.transform.registration.abstrakt.AbstractBUnwarpJRegistration
io.github.mianalysis.mia.module.images.transform.registration.abstrakt.io.github.mianalysis.mia.module.images.transform.registration.abstrakt.AbstractRegistration
io.github.mianalysis.mia.module.inputoutput
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.ExportACCDataset
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.ExportVOCAnnotations
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.FrameOutOfRangeException
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.GenericImageSaver
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.ImageLoader
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.ImageSaver
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.LoadImage
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.LoadObjectsFromROIs
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.MetadataExtractor
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.ObjectLoader
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.SaveObjectsAsROIs
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.SaveOverlayAsROIs
io.github.mianalysis.mia.module.inputoutput.io.github.mianalysis.mia.module.inputoutput.VideoLoader
io.github.mianalysis.mia.module.inputoutput.abstrakt
io.github.mianalysis.mia.module.inputoutput.abstrakt.io.github.mianalysis.mia.module.inputoutput.abstrakt.AbstractSaver
io.github.mianalysis.mia.module.interfaces
io.github.mianalysis.mia.module.interfaces.io.github.mianalysis.mia.module.interfaces.MeasurementPositionProvider
io.github.mianalysis.mia.module.objects.convert
io.github.mianalysis.mia.module.objects.convert.io.github.mianalysis.mia.module.objects.convert.ConvertImageToObjects
io.github.mianalysis.mia.module.objects.convert.io.github.mianalysis.mia.module.objects.convert.ConvertObjectsToImage
io.github.mianalysis.mia.module.objects.convert.io.github.mianalysis.mia.module.objects.convert.CreateDistanceMap
io.github.mianalysis.mia.module.objects.detect
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.AbstractHoughDetection
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.CircleHoughDetection
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.ClusterPoints
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.CreateWholeSliceObjects
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.IdentifyObjects
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.RectangleHoughDetection
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.RidgeDetection
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.RunTrackMate
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.SphereHoughDetection
io.github.mianalysis.mia.module.objects.detect.io.github.mianalysis.mia.module.objects.detect.SpotDetection
io.github.mianalysis.mia.module.objects.filter
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterByChildren
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterByMeasurement
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterByMeasurementExtremes
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterByMetadata
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterByPartners
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterByProximity
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterObjects
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterOnImageEdge
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterSpecificObjectIDs
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterWithWithoutMeasurement
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterWithWithoutMetadata
io.github.mianalysis.mia.module.objects.filter.io.github.mianalysis.mia.module.objects.filter.FilterWithWithoutParent
io.github.mianalysis.mia.module.objects.measure.intensity
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureIntensityAlongPath
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureObjectColocalisation
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureObjectGiniCoefficient
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureObjectGreyscaleKFunction
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureObjectIntensity
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureObjectIntensityOrientation
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureObjectTexture
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureRadialIntensityProfile
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureSpotIntensity
io.github.mianalysis.mia.module.objects.measure.intensity.io.github.mianalysis.mia.module.objects.measure.intensity.MeasureTextureAlongPath
io.github.mianalysis.mia.module.objects.measure.miscellaneous
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.AdoptParentMeasurement
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.ApplyManualClassification
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.ApplyWekaObjectClassification
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.BinObjectsByMeasurement
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.CalculateStatsForChildren
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.CalculateStatsForPartners
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.ChildObjectCount
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.ObjectMeasurementCalculator
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.ObjectTimepoint
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.ParentObjectID
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.PartnerObjectCount
io.github.mianalysis.mia.module.objects.measure.miscellaneous.io.github.mianalysis.mia.module.objects.measure.miscellaneous.ReplaceMeasurementValue
io.github.mianalysis.mia.module.objects.measure.spatial
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.CalculateNearestNeighbour
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.MeasureObjectCentroid
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.MeasureObjectCurvature
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.MeasureObjectLimits
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.MeasureObjectOverlap
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.MeasureObjectShape
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.MeasureObjectWidth
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.MeasureRelativeOrientation
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.MeasureSpecificWidth
io.github.mianalysis.mia.module.objects.measure.spatial.io.github.mianalysis.mia.module.objects.measure.spatial.MeasureTrackMotion
io.github.mianalysis.mia.module.objects.process
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.CreateBoundingBoxes
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.CreateDistanceBands
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.CreateSkeleton
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.ExtractObjectCrossSection
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.ExtractObjectEdges
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.FitActiveContours
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.FitConcaveHull2D
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.FitConvexHull2D
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.FitEllipse
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.FitGaussian2D
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.FitLongestChord
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.GetLocalObjectRegion
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.GetObjectSurface
io.github.mianalysis.mia.module.objects.process.io.github.mianalysis.mia.module.objects.process.GrowObjects
io.github.mianalysis.mia.module.objects.process.tools
io.github.mianalysis.mia.module.objects.process.tools.io.github.mianalysis.mia.module.objects.process.tools.EllipseCalculator
io.github.mianalysis.mia.module.objects.relate
io.github.mianalysis.mia.module.objects.relate.io.github.mianalysis.mia.module.objects.relate.Linkable
io.github.mianalysis.mia.module.objects.relate.io.github.mianalysis.mia.module.objects.relate.ObjectSlicesTo3D
io.github.mianalysis.mia.module.objects.relate.io.github.mianalysis.mia.module.objects.relate.RelateManyToMany
io.github.mianalysis.mia.module.objects.relate.io.github.mianalysis.mia.module.objects.relate.RelateManyToOne
io.github.mianalysis.mia.module.objects.relate.io.github.mianalysis.mia.module.objects.relate.RelateObjects
io.github.mianalysis.mia.module.objects.relate.io.github.mianalysis.mia.module.objects.relate.RelateOneToOne
io.github.mianalysis.mia.module.objects.relate.io.github.mianalysis.mia.module.objects.relate.SingleClassCluster
io.github.mianalysis.mia.module.objects.relate.mergeobjects
io.github.mianalysis.mia.module.objects.relate.mergeobjects.io.github.mianalysis.mia.module.objects.relate.mergeobjects.CombineObjectSets
io.github.mianalysis.mia.module.objects.relate.mergeobjects.io.github.mianalysis.mia.module.objects.relate.mergeobjects.MergeRelatedObjects
io.github.mianalysis.mia.module.objects.relate.mergeobjects.io.github.mianalysis.mia.module.objects.relate.mergeobjects.MergeSingleClass
io.github.mianalysis.mia.module.objects.track
io.github.mianalysis.mia.module.objects.track.io.github.mianalysis.mia.module.objects.track.TrackObjects
io.github.mianalysis.mia.module.objects.track.io.github.mianalysis.mia.module.objects.track.TrackObjectsKalman
io.github.mianalysis.mia.module.objects.track.io.github.mianalysis.mia.module.objects.track.TrackObjectsOverlap3D
io.github.mianalysis.mia.module.objects.track.abstrakt
io.github.mianalysis.mia.module.objects.track.abstrakt.io.github.mianalysis.mia.module.objects.track.abstrakt.AbstractObjectTracking
io.github.mianalysis.mia.module.objects.track.abstrakt.io.github.mianalysis.mia.module.objects.track.abstrakt.AbstractSplittingMergingObjectTracking
io.github.mianalysis.mia.module.objects.track.trackmate
io.github.mianalysis.mia.module.objects.track.trackmate.io.github.mianalysis.mia.module.objects.track.trackmate.OverlapTracker3D
io.github.mianalysis.mia.module.objects.track.trackmate.io.github.mianalysis.mia.module.objects.track.trackmate.OverlapTracker3DFactory
io.github.mianalysis.mia.module.objects.track.trackmate.io.github.mianalysis.mia.module.objects.track.trackmate.OverlapTracker3DSettingsPanel
io.github.mianalysis.mia.module.objects.transform
io.github.mianalysis.mia.module.objects.transform.io.github.mianalysis.mia.module.objects.transform.DuplicateAcrossTime
io.github.mianalysis.mia.module.objects.transform.io.github.mianalysis.mia.module.objects.transform.ExpandShrinkObjects
io.github.mianalysis.mia.module.objects.transform.io.github.mianalysis.mia.module.objects.transform.FillHolesInObjects
io.github.mianalysis.mia.module.objects.transform.io.github.mianalysis.mia.module.objects.transform.MaskObjects
io.github.mianalysis.mia.module.objects.transform.io.github.mianalysis.mia.module.objects.transform.ProjectObjects
io.github.mianalysis.mia.module.objects.transform.io.github.mianalysis.mia.module.objects.transform.ReassignEnclosedObjects
io.github.mianalysis.mia.module.objects.transform.io.github.mianalysis.mia.module.objects.transform.TrackEditor
io.github.mianalysis.mia.module.script
io.github.mianalysis.mia.module.script.io.github.mianalysis.mia.module.script.RunScript
io.github.mianalysis.mia.module.script.io.github.mianalysis.mia.module.script.RunSingleCommand
io.github.mianalysis.mia.module.system
io.github.mianalysis.mia.module.system.io.github.mianalysis.mia.module.system.AddCustomMetadataItem
io.github.mianalysis.mia.module.system.io.github.mianalysis.mia.module.system.RemoveImages
io.github.mianalysis.mia.module.system.io.github.mianalysis.mia.module.system.RemoveObjects
io.github.mianalysis.mia.module.system.io.github.mianalysis.mia.module.system.TestBigImage
io.github.mianalysis.mia.module.visualise
io.github.mianalysis.mia.module.visualise.io.github.mianalysis.mia.module.visualise.CreateMeasurementMap
io.github.mianalysis.mia.module.visualise.io.github.mianalysis.mia.module.visualise.CreateOrthogonalView
io.github.mianalysis.mia.module.visualise.io.github.mianalysis.mia.module.visualise.ShowImage
io.github.mianalysis.mia.module.visualise.io.github.mianalysis.mia.module.visualise.ShowImageMeasurements
io.github.mianalysis.mia.module.visualise.io.github.mianalysis.mia.module.visualise.ShowMetadata
io.github.mianalysis.mia.module.visualise.io.github.mianalysis.mia.module.visualise.ShowObjectMeasurements
io.github.mianalysis.mia.module.visualise.io.github.mianalysis.mia.module.visualise.ShowObjectMetadata
io.github.mianalysis.mia.module.visualise.overlays
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AbstractOverlay
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddAllObjectPoints
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddArrows
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddContourLines
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddFromPositionMeasurement
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddLabels
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddLine
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddObjectCentroid
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddObjectFill
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddObjectOutline
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddObjectsOverlay
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddRelationshipConnection
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddText
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.AddTracks
io.github.mianalysis.mia.module.visualise.overlays.io.github.mianalysis.mia.module.visualise.overlays.ClearOverlay
io.github.mianalysis.mia.module.visualise.plots
io.github.mianalysis.mia.module.visualise.plots.io.github.mianalysis.mia.module.visualise.plots.PlotMeasurementTimeseries
io.github.mianalysis.mia.module.visualise.plots.io.github.mianalysis.mia.module.visualise.plots.PlotMeasurementsScatter
io.github.mianalysis.mia.module.visualise.plots.io.github.mianalysis.mia.module.visualise.plots.PlotTrackMotility
io.github.mianalysis.mia.moduledependencies
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.AffineCentroidsDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.BinaryOperationsDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.DistanceMapDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.FitEllipseDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.MeasureTrackMotionDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.RelateManyToManyDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.RelateManyToOneDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.RelateOneToOneDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.RidgeDetectionDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.RunTrackMateDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.SpotDetectionDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.TrackEditorDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.TrackObjectsDependency
io.github.mianalysis.mia.moduledependencies.io.github.mianalysis.mia.moduledependencies.WekaProbabilityMapsDependency
io.github.mianalysis.mia.thirdparty
io.github.mianalysis.mia.thirdparty.io.github.mianalysis.mia.thirdparty.Stack_Focuser_
io.github.mianalysis.mia.thirdparty.io.github.mianalysis.mia.thirdparty.bUnwarpJ_Mod




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