io.github.mianalysis.mia.module.objects.track.trackmate.OverlapTracker3DSettingsPanel Maven / Gradle / Ivy

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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.
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/*-
 * #%L
 * TrackMate: your buddy for everyday tracking.
 * %%
 * Copyright (C) 2010 - 2024 TrackMate developers.
 * %%
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public
 * License along with this program.  If not, see
 * .
 * #L%
 */
package io.github.mianalysis.mia.module.objects.track.trackmate;

import static fiji.plugin.trackmate.gui.Fonts.BIG_FONT;
import static fiji.plugin.trackmate.gui.Fonts.FONT;
import static fiji.plugin.trackmate.tracking.overlap.OverlapTrackerFactory.DEFAULT_MIN_IOU;
import static fiji.plugin.trackmate.tracking.overlap.OverlapTrackerFactory.KEY_MIN_IOU;

import java.awt.FlowLayout;
import java.awt.Font;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import java.awt.Insets;
import java.util.HashMap;
import java.util.Map;

import javax.swing.JFormattedTextField;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.SwingConstants;

import fiji.plugin.trackmate.gui.GuiUtils;
import fiji.plugin.trackmate.gui.components.ConfigurationPanel;
import fiji.plugin.trackmate.tracking.overlap.OverlapTrackerFactory;

public class OverlapTracker3DSettingsPanel extends ConfigurationPanel
{

	private static final long serialVersionUID = 1L;

	private final JFormattedTextField ftfMinIoU;

	public OverlapTracker3DSettingsPanel()
	{
		final GridBagLayout gridBagLayout = new GridBagLayout();
		gridBagLayout.columnWidths = new int[] { 164, 59, 0 };
		gridBagLayout.rowHeights = new int[] { 20, 20, 225, 0, 0, 20, 0 };
		gridBagLayout.columnWeights = new double[] { 1.0, 0.0, Double.MIN_VALUE };
		gridBagLayout.rowWeights = new double[] { 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, Double.MIN_VALUE };
		setLayout( gridBagLayout );

		final JLabel lblSettingsForTracker = new JLabel( "Settings for tracker:" );
		lblSettingsForTracker.setFont( FONT );
		final GridBagConstraints gbc_lblSettingsForTracker = new GridBagConstraints();
		gbc_lblSettingsForTracker.fill = GridBagConstraints.BOTH;
		gbc_lblSettingsForTracker.insets = new Insets( 5, 5, 5, 5 );
		gbc_lblSettingsForTracker.gridwidth = 2;
		gbc_lblSettingsForTracker.gridx = 0;
		gbc_lblSettingsForTracker.gridy = 0;
		add( lblSettingsForTracker, gbc_lblSettingsForTracker );

		final JLabel labelTracker = new JLabel( OverlapTrackerFactory.TRACKER_NAME );
		labelTracker.setFont( BIG_FONT );
		labelTracker.setHorizontalAlignment( SwingConstants.CENTER );
		final GridBagConstraints gbc_labelTracker = new GridBagConstraints();
		gbc_labelTracker.fill = GridBagConstraints.BOTH;
		gbc_labelTracker.insets = new Insets( 5, 5, 5, 5 );
		gbc_labelTracker.gridwidth = 2;
		gbc_labelTracker.gridx = 0;
		gbc_labelTracker.gridy = 1;
		add( labelTracker, gbc_labelTracker );

		final JLabel labelTrackerDescription = new JLabel( "" );
		labelTrackerDescription.setFont( FONT.deriveFont( Font.ITALIC ) );
		labelTrackerDescription.setText( OverlapTrackerFactory.TRACKER_INFO_TEXT
				.replace( "
", "" )
				.replace( "", "
" )
				.replace( "", "" ) );
		final GridBagConstraints gbc_labelTrackerDescription = new GridBagConstraints();
		gbc_labelTrackerDescription.fill = GridBagConstraints.BOTH;
		gbc_labelTrackerDescription.insets = new Insets( 5, 5, 5, 5 );
		gbc_labelTrackerDescription.gridwidth = 2;
		gbc_labelTrackerDescription.gridx = 0;
		gbc_labelTrackerDescription.gridy = 2;
		add( labelTrackerDescription, gbc_labelTrackerDescription );

		final JPanel panelMethod = new JPanel();
		final FlowLayout flowLayout = ( FlowLayout ) panelMethod.getLayout();
		flowLayout.setHgap( 10 );
		flowLayout.setAlignment( FlowLayout.TRAILING );
		final GridBagConstraints gbc_panel = new GridBagConstraints();
		gbc_panel.gridwidth = 2;
		gbc_panel.insets = new Insets( 5, 5, 5, 5 );
		gbc_panel.fill = GridBagConstraints.BOTH;
		gbc_panel.gridx = 0;
		gbc_panel.gridy = 3;
		add( panelMethod, gbc_panel );

		final JLabel lblIouCalculation = new JLabel( "IoU calculation:" );
		lblIouCalculation.setFont( FONT );
		panelMethod.add( lblIouCalculation );

		final JLabel lblMinIoU = new JLabel( "Min IoU:" );
		lblMinIoU.setFont( FONT );
		final GridBagConstraints gbc_lblMinIoU = new GridBagConstraints();
		gbc_lblMinIoU.fill = GridBagConstraints.VERTICAL;
		gbc_lblMinIoU.anchor = GridBagConstraints.EAST;
		gbc_lblMinIoU.insets = new Insets( 5, 5, 5, 5 );
		gbc_lblMinIoU.gridx = 0;
		gbc_lblMinIoU.gridy = 4;
		add( lblMinIoU, gbc_lblMinIoU );

		ftfMinIoU = new JFormattedTextField();
		ftfMinIoU.setText( "0" );
		ftfMinIoU.setFont( FONT );
		ftfMinIoU.setHorizontalAlignment( SwingConstants.CENTER );
		final GridBagConstraints gbc_ftfMinIoU = new GridBagConstraints();
		gbc_ftfMinIoU.insets = new Insets( 5, 5, 5, 5 );
		gbc_ftfMinIoU.fill = GridBagConstraints.BOTH;
		gbc_ftfMinIoU.gridx = 1;
		gbc_ftfMinIoU.gridy = 4;
		add( ftfMinIoU, gbc_ftfMinIoU );

		final JLabel lblScaleFactor = new JLabel( "Scale factor:" );
		lblScaleFactor.setFont( FONT );
		final GridBagConstraints gbc_lblScaleFactor = new GridBagConstraints();
		gbc_lblScaleFactor.anchor = GridBagConstraints.EAST;
		gbc_lblScaleFactor.fill = GridBagConstraints.VERTICAL;
		gbc_lblScaleFactor.insets = new Insets( 5, 5, 5, 5 );
		gbc_lblScaleFactor.gridx = 0;
		gbc_lblScaleFactor.gridy = 5;
		add( lblScaleFactor, gbc_lblScaleFactor );

		// Select text-fields content on focus.
		GuiUtils.selectAllOnFocus( ftfMinIoU );

    }

	@Override
	public Map< String, Object > getSettings()
	{
		final Map< String, Object > settings = new HashMap<>();
		settings.put( KEY_MIN_IOU, ( ( Number ) ftfMinIoU.getValue() ).doubleValue() );
		return settings;
	}

	@Override
	public void setSettings( final Map< String, Object > settings )
	{
		ftfMinIoU.setValue( settings.get( KEY_MIN_IOU ) == null ? DEFAULT_MIN_IOU :  settings.get( KEY_MIN_IOU ));	
	}

	@Override
	public void clean()
	{}
}