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ModularImageAnalysis (MIA) is an ImageJ plugin which provides a modular framework for assembling image and object analysis workflows. Detected objects can be transformed, filtered, measured and related. Analysis workflows are batch-enabled by default, allowing easy processing of high-content datasets.

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package io.github.mianalysis.mia.module.visualise;

import io.github.mianalysis.mia.module.Module;
import io.github.mianalysis.mia.module.Modules;
import io.github.mianalysis.mia.module.Module;
import org.scijava.Priority;
import org.scijava.plugin.Plugin;
import io.github.mianalysis.mia.module.Category;
import io.github.mianalysis.mia.module.Categories;
import io.github.mianalysis.mia.object.Workspace;
import io.github.mianalysis.mia.object.parameters.InputImageP;
import io.github.mianalysis.mia.object.parameters.SeparatorP;
import io.github.mianalysis.mia.object.refs.collections.ImageMeasurementRefs;
import io.github.mianalysis.mia.object.refs.collections.MetadataRefs;
import io.github.mianalysis.mia.object.refs.collections.ObjMeasurementRefs;
import io.github.mianalysis.mia.object.refs.collections.ObjMetadataRefs;
import io.github.mianalysis.mia.object.refs.collections.ParentChildRefs;
import io.github.mianalysis.mia.object.refs.collections.PartnerRefs;
import io.github.mianalysis.mia.object.system.Status;
import io.github.mianalysis.mia.object.parameters.Parameters;

/**
 * Created by Stephen Cross on 14/10/2019.
 */

/**
* Displays all measurements associated with an image.
*/
@Plugin(type = Module.class, priority=Priority.LOW, visible=true)
public class ShowImageMeasurements extends Module {

	/**
	* 
	*/
    public static final String INPUT_SEPARATOR = "Input";

	/**
	* Image to display all measurements for.
	*/
    public static final String INPUT_IMAGE = "Input image";

    public ShowImageMeasurements(Modules modules) {
        super("Show image measurements", modules);

        // This module likely wants to have this enabled (otherwise it does nothing)
        showOutput = true;

    }

    @Override
    public String getVersionNumber() {
        return "1.0.0";
    }

    @Override
    public String getDescription() {
        return "Displays all measurements associated with an image.";
    }


    @Override
    public Category getCategory() {
        return Categories.VISUALISATION;
    }

    @Override
    protected Status process(Workspace workspace) {
        String inputImage = parameters.getValue(INPUT_IMAGE,workspace);

        if (showOutput) workspace.getImage(inputImage).showAllMeasurements();

        return Status.PASS;

    }

    @Override
    protected void initialiseParameters() {
        parameters.add(new SeparatorP(INPUT_SEPARATOR,this));
        parameters.add(new InputImageP(INPUT_IMAGE,this,"","Image to display all measurements for."));
    }

    @Override
    public Parameters updateAndGetParameters() {
Workspace workspace = null;
        return parameters;
    }

    @Override
    public ImageMeasurementRefs updateAndGetImageMeasurementRefs() {
return null;
    }

    @Override
public ObjMeasurementRefs updateAndGetObjectMeasurementRefs() {
return null;
    }

    @Override
    public ObjMetadataRefs updateAndGetObjectMetadataRefs() {  
	return null; 
    }

    @Override
    public MetadataRefs updateAndGetMetadataReferences() {
return null;
    }

    @Override
    public ParentChildRefs updateAndGetParentChildRefs() {
return null;
    }

    @Override
    public PartnerRefs updateAndGetPartnerRefs() {
return null;
    }

    @Override
    public boolean verify() {
        return true;
    }
}