nextflow.fusion.FusionEnvProvider.groovy Maven / Gradle / Ivy

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A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a portable manner

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/*
 * Copyright 2013-2024, Seqera Labs
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *
 */

package nextflow.fusion


import nextflow.plugin.Plugins
/**
 * Provider strategy for {@link FusionEnv}
 *
 * @author Paolo Di Tommaso 
 */
class FusionEnvProvider {

    Map getEnvironment(String scheme) {
        final config = FusionConfig.getConfig()
        final list = Plugins.getExtensions(FusionEnv)
        final result = new HashMap()
        for( FusionEnv it : list ) {
            final env = it.getEnvironment(scheme,config)
            if( env ) result.putAll(env)
        }
        // tags setting
        if( config.tagsEnabled() )
            result.FUSION_TAGS = config.tagsPattern()
        // logs setting
        if( config.logOutput() )
            result.FUSION_LOG_OUTPUT = config.logOutput()
        if( config.logLevel() )
            result.FUSION_LOG_LEVEL = config.logLevel()
        if( config.cacheSize() )
            result.FUSION_CACHE_SIZE = "${config.cacheSize().toMega()}M"
        return result
    }
}