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A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a portable manner
/*
* Copyright 2013-2024, Seqera Labs
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package nextflow
import groovy.runtime.metaclass.NextflowDelegatingMetaClass
import nextflow.extension.CH
import nextflow.plugin.extension.PluginExtensionProvider
import nextflow.script.ExecutionStack
import nextflow.script.WorkflowBinding
/**
* Helper class to shortcut common api
*
* @author Paolo Di Tommaso
*/
class NF {
static private Session session() {
return (Session)Global.session
}
static void init() {
NextflowDelegatingMetaClass.provider = PluginExtensionProvider.INSTANCE()
CH.init()
WorkflowBinding.init()
}
static boolean hasOperator(String name) {
NextflowDelegatingMetaClass.provider.operatorNames().contains(name)
}
static boolean isDsl1() {
!NextflowMeta.instance.isDsl2()
}
static boolean isDsl2() {
NextflowMeta.instance.isDsl2()
}
static Binding getBinding() {
isDsl2() ? ExecutionStack.binding() : session().getBinding()
}
static String lookupVariable(value) {
if( isDsl2() )
return WorkflowBinding.lookup(value)
return session().getBinding().getVariableName(value)
}
static boolean isStrictMode() {
NextflowMeta.instance.isStrictModeEnabled()
}
static boolean isModuleBinariesEnabled() {
NextflowMeta.instance.isModuleBinariesEnabled()
}
static boolean isOutputDefinitionEnabled() {
NextflowMeta.instance.preview.output
}
static boolean isRecurseEnabled() {
NextflowMeta.instance.preview.recursion
}
static boolean isTopicChannelEnabled() {
NextflowMeta.instance.preview.topic
}
}
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