nextflow.plugin.Plugins.groovy Maven / Gradle / Ivy
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A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a portable manner
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/*
* Copyright 2013-2024, Seqera Labs
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*/
package nextflow.plugin
import java.nio.file.Path
import groovy.transform.CompileStatic
import groovy.util.logging.Slf4j
import org.pf4j.PluginManager
/**
* Plugin manager specialized for Nextflow build environment
*
* @author Paolo Di Tommaso
*/
@Slf4j
@CompileStatic
class Plugins {
public static final String DEFAULT_PLUGINS_REPO = 'https://raw.githubusercontent.com/nextflow-io/plugins/main/plugins.json'
private final static PluginsFacade INSTANCE = new PluginsFacade()
static PluginManager getManager() { INSTANCE.manager }
static synchronized void init(boolean embeddedMode=false) {
INSTANCE.init(embeddedMode)
}
static synchronized void init(Path root, String mode, CustomPluginManager pluginManager) {
INSTANCE.init(root, mode, pluginManager)
}
/**
* @param config
*/
static void load(Map config) {
INSTANCE.load(config)
}
static void start(String pluginId) {
INSTANCE.start(pluginId)
}
static synchronized void stop() {
INSTANCE.stop()
}
static List getExtensions(Class type) {
INSTANCE.getExtensions(type)
}
static List getPriorityExtensions(Class type, String group=null) {
INSTANCE.getPriorityExtensions(type,group)
}
static T getExtension(Class type) {
final allExtensions = INSTANCE.getExtensions(type)
return allExtensions ? allExtensions.first() : null
}
static List getExtensionsInPluginId(Class type, String pluginId) {
final allExtensions = INSTANCE.getExtensions(type, pluginId)
return allExtensions
}
static void pull(List ids) {
INSTANCE.pullPlugins(ids)
}
static boolean startIfMissing(String pluginId) {
if( INSTANCE ) {
return INSTANCE.startIfMissing(pluginId)
} else {
log.debug "Plugins subsystem not available - Ignoring installIfMissing('$pluginId')"
return false
}
}
static boolean isStarted(String pluginId) {
INSTANCE.isStarted(pluginId)
}
}