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A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a portable manner
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/*
* Copyright 2013-2024, Seqera Labs
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package nextflow.util
/**
* Split a string into literal tokens i.e. sequence of chars that does not contain a blank
* or wrapper by a quote or double quote
*
*
* @author Paolo Di Tommaso
*
*/
class QuoteStringTokenizer implements Iterator, Iterable {
private List chars = Arrays.asList(' ' as Character);
private List tokens = new ArrayList();
private Iterator itr;
public QuoteStringTokenizer( String value ) {
this(value, ' ' as Character);
}
public QuoteStringTokenizer( String value, char... separators ) {
if( separators == null || separators.length==0 ) {
chars = new ArrayList(3);
chars .add(' ' as Character);
}
else {
chars = new ArrayList(3);
for( char ch : separators ) { chars.add(ch); }
}
chars.add("\"" as char);
chars.add("'" as char);
/* start parsing */
parseNext(value != null ? value.trim() : "");
}
void parseNext( String value ) {
for( int i=0; i0 ) {
tokens.add(value.substring(0,i));
}
if( ch=='"' as char || ch=='\'' as char ) {
parseQuote(value.substring(i+1), ch);
}
else if( chars.contains(ch) ) {
parseNext(value.substring(i+1));
}
break;
}
// and of the string
else if( i+1 == value.length() ) {
tokens.add(value);
}
}
}
void parseQuote( String value, char delim ) {
int p = value.indexOf(delim as String);
if( p == -1 ) {
tokens.add(value);
return;
}
tokens.add( value.substring(0,p) );
parseNext(value.substring(p+1));
}
public boolean hasNext() {
return itr().hasNext();
}
public String next() {
return itr().next();
}
public void remove() {
throw new UnsupportedOperationException("Remove not supported");
}
public String toString() {
return tokens.toString();
}
public Iterator iterator() {
return itr();
}
/*
* lazy iterator creator
*/
private Iterator itr() {
if( itr == null ) {
itr = tokens.iterator();
}
return itr;
}
}