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A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a portable manner
/*
* Copyright (c) 2013-2015, Centre for Genomic Regulation (CRG).
* Copyright (c) 2013-2015, Paolo Di Tommaso and the respective authors.
*
* This file is part of 'Nextflow'.
*
* Nextflow is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Nextflow is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Nextflow. If not, see .
*/
package nextflow.daemon
import groovy.util.logging.Slf4j
import nextflow.executor.GgGridFactory
import nextflow.executor.ServiceName
import nextflow.file.FileHelper
import nextflow.file.ggfs.GgFileSystemProvider
import nextflow.file.ggfs.GgPath
import nextflow.util.KryoHelper
import nextflow.util.PathSerializer
import org.gridgain.grid.Grid
/**
* Launch the GridGain daemon
*
* @author Paolo Di Tommaso
*/
@Slf4j
@ServiceName('gridgain')
class GgDaemon implements DaemonLauncher {
Grid grid
@Override
void launch(Map config) {
log.info "Configuring GridGain cluster daemon"
/*
* register path serializer
*/
KryoHelper.register(GgPath, PathSerializer)
/*
* Launch grid instance
*/
grid = new GgGridFactory('worker', config).start()
/*
* configure the file system
*/
log.debug "Configuring GridGain file system"
FileHelper.getOrCreateFileSystemFor(GgFileSystemProvider.SCHEME, [grid: grid])
}
// @Slf4j
// class DaemonLifecycleBean implements GridLifecycleBean {
//
// @Override
// void onLifecycleEvent(GridLifecycleEventType event) throws GridException {
// if( event == GridLifecycleEventType.BEFORE_GRID_START ) {
// onBeforeStart()
// }
// else if( event == GridLifecycleEventType.AFTER_GRID_START ) {
// onAfterStart()
// }
// else if( event == GridLifecycleEventType.BEFORE_GRID_STOP ) {
// onBeforeStop()
// }
// else if( event == GridLifecycleEventType.AFTER_GRID_STOP ) {
// onAfterStop()
// }
// }
//
// def onBeforeStart() {
// log.debug "Grid > before start"
// }
//
// def onAfterStart() {
// log.debug "Grid > after start"
// }
//
// def onBeforeStop() {
// log.debug "Grid > before stop"
// }
//
// def onAfterStop() {
// log.debug "Grid > after stop"
// }
// }
}