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Statistical sampling library for use in virtdata libraries, based on apache commons math 4
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/*
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package org.apache.commons.math4.stat.descriptive.summary;

import java.io.Serializable;

import org.apache.commons.math4.exception.MathIllegalArgumentException;
import org.apache.commons.math4.exception.NullArgumentException;
import org.apache.commons.math4.stat.descriptive.AbstractStorelessUnivariateStatistic;
import org.apache.commons.math4.util.FastMath;
import org.apache.commons.math4.util.MathArrays;
import org.apache.commons.math4.util.MathUtils;

/**
 * Returns the sum of the natural logs for this collection of values.
 * 
 * Uses {@link FastMath#log(double)} to compute the logs.
 * Therefore,
 * 

 * If any of values are < 0, the result is NaN.
 * If all values are non-negative and less than
 * Double.POSITIVE_INFINITY,  but at least one value is 0, the
 * result is Double.NEGATIVE_INFINITY.
 * If both Double.POSITIVE_INFINITY and
 * Double.NEGATIVE_INFINITY are among the values, the result is
 * NaN.
 * 
 * 
 * Note that this implementation is not synchronized. If
 * multiple threads access an instance of this class concurrently, and at least
 * one of the threads invokes the increment() or
 * clear() method, it must be synchronized externally.
 */
public class SumOfLogs extends AbstractStorelessUnivariateStatistic implements Serializable {

    /** Serializable version identifier */
    private static final long serialVersionUID = 20150412L;

    /** Number of values that have been added */
    private int n;

    /**
     * The currently running value
     */
    private double value;

    /**
     * Create a SumOfLogs instance.
     */
    public SumOfLogs() {
       value = 0d;
       n = 0;
    }

    /**
     * Copy constructor, creates a new {@code SumOfLogs} identical
     * to the {@code original}.
     *
     * @param original the {@code SumOfLogs} instance to copy
     * @throws NullArgumentException if original is null
     */
    public SumOfLogs(SumOfLogs original) throws NullArgumentException {
        copy(original, this);
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void increment(final double d) {
        value += FastMath.log(d);
        n++;
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public double getResult() {
        return value;
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public long getN() {
        return n;
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public void clear() {
        value = 0d;
        n = 0;
    }

    /**
     * Returns the sum of the natural logs of the entries in the specified portion of
     * the input array, or Double.NaN if the designated subarray
     * is empty.
     * 
     * Throws MathIllegalArgumentException if the array is null.
     * 
     * See {@link SumOfLogs}.
     *
     * @param values the input array
     * @param begin index of the first array element to include
     * @param length the number of elements to include
     * @return the sum of the natural logs of the values or 0 if
     * length = 0
     * @throws MathIllegalArgumentException if the array is null or the array index
     *  parameters are not valid
     */
    @Override
    public double evaluate(final double[] values, final int begin, final int length)
        throws MathIllegalArgumentException {

        double sumLog = Double.NaN;
        if (MathArrays.verifyValues(values, begin, length, true)) {
            sumLog = 0.0;
            for (int i = begin; i < begin + length; i++) {
                sumLog += FastMath.log(values[i]);
            }
        }
        return sumLog;
    }

    /**
     * {@inheritDoc}
     */
    @Override
    public SumOfLogs copy() {
        SumOfLogs result = new SumOfLogs();
        // No try-catch or advertised exception here because args are valid
        copy(this, result);
        return result;
    }

    /**
     * Copies source to dest.
     * Neither source nor dest can be null.
     *
     * @param source SumOfLogs to copy
     * @param dest SumOfLogs to copy to
     * @throws NullArgumentException if either source or dest is null
     */
    public static void copy(SumOfLogs source, SumOfLogs dest)
        throws NullArgumentException {
        MathUtils.checkNotNull(source);
        MathUtils.checkNotNull(dest);
        dest.n = source.n;
        dest.value = source.value;
    }
}