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Statistical sampling library for use in virtdata libraries, based on apache commons math 4

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/*
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package org.apache.commons.rng.sampling;

import org.apache.commons.rng.UniformRandomProvider;

/**
 * Class for representing combinations
 * of a sequence of integers.
 *
 * 

A combination is a selection of items from a collection, such that (unlike * permutations) the order of selection does not matter. This * sampler can be used to generate a combination in an unspecified order and is * faster than the corresponding {@link PermutationSampler}.

* *

Note that the sample order is unspecified. For example a sample * combination of 2 from 4 may return {@code [0,1]} or {@code [1,0]} as the two are * equivalent, and the order of a given combination may change in subsequent samples.

* *

The sampler can be used to generate indices to select subsets where the * order of the subset is not important.

* *

Sampling uses {@link UniformRandomProvider#nextInt(int)}.

* * @see PermutationSampler */ public class CombinationSampler { /** Domain of the combination. */ private final int[] domain; /** The number of steps of a full shuffle to perform. */ private final int steps; /** * The section to copy the domain from after a partial shuffle. */ private final boolean upper; /** RNG. */ private final UniformRandomProvider rng; /** * Creates a generator of combinations. * *

The {@link #sample()} method will generate an integer array of * length {@code k} whose entries are selected randomly, without * repetition, from the integers 0, 1, ..., {@code n}-1 (inclusive). * The returned array represents a combination of {@code n} taken * {@code k}. * *

In contrast to a permutation, the returned array is not * guaranteed to be in a random order. The {@link #sample()} * method returns the array in an unspecified order. * *

If {@code n <= 0} or {@code k <= 0} or {@code k > n} then no combination * is required and an exception is raised. * * @param rng Generator of uniformly distributed random numbers. * @param n Domain of the combination. * @param k Size of the combination. * @throws IllegalArgumentException if {@code n <= 0} or {@code k <= 0} or * {@code k > n}. */ public CombinationSampler(UniformRandomProvider rng, int n, int k) { SubsetSamplerUtils.checkSubset(n, k); domain = PermutationSampler.natural(n); // The sample can be optimised by only performing the first k or (n - k) steps // from a full Fisher-Yates shuffle from the end of the domain to the start. // The upper positions will then contain a random sample from the domain. The // lower half is then by definition also a random sample (just not in a random order). // The sample is then picked using the upper or lower half depending which // makes the number of steps smaller. upper = k <= n / 2; steps = upper ? k : n - k; this.rng = rng; } /** * Return a combination of {@code k} whose entries are selected randomly, * without repetition, from the integers 0, 1, ..., {@code n}-1 (inclusive). * *

The order of the returned array is not guaranteed to be in a random order * as the order of a combination does not matter. * * @return a random combination. */ public int[] sample() { return SubsetSamplerUtils.partialSample(domain, steps, rng, upper); } }





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