it.tidalwave.bluebill.taxonomy.birds.birdsofindia.BirdsOfIndia2009Importer Maven / Gradle / Ivy
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/***********************************************************************************************************************
*
* blueBill Resources - open source birding
* Copyright (C) 2009-2011 by Tidalwave s.a.s. (http://www.tidalwave.it)
*
***********************************************************************************************************************
*
* Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on
* an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the
* specific language governing permissions and limitations under the License.
*
***********************************************************************************************************************
*
* WWW: http://bluebill.tidalwave.it
* SCM: https://java.net/hg/bluebill~resources-src
*
**********************************************************************************************************************/
package it.tidalwave.bluebill.taxonomy.birds.birdsofindia;
import it.tidalwave.bluebill.taxonomy.Taxon.Builder;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Map;
import javax.annotation.Nonnull;
import java.util.Locale;
import java.util.Scanner;
import java.io.BufferedReader;
import java.io.InputStream;
import java.io.IOException;
import java.io.InputStreamReader;
import org.openrdf.repository.Repository;
import org.openrdf.repository.RepositoryException;
import it.tidalwave.bluebill.taxonomy.Taxonomy;
import it.tidalwave.bluebill.taxonomy.Taxon;
import it.tidalwave.bluebill.taxonomy.birds.BirdLocaleInfo;
import it.tidalwave.bluebill.taxonomy.birds.BirdTaxonomyImporter;
import it.tidalwave.bluebill.taxonomy.birds.impl.PatchedDefaultMutableDisplayable;
import lombok.extern.slf4j.Slf4j;
import static it.tidalwave.bluebill.taxonomy.Taxon.Rank.*;
/***********************************************************************************************************************
*
* @author Fabrizio Giudici
* @version $Id$
*
**********************************************************************************************************************/
@Slf4j
public class BirdsOfIndia2009Importer extends BirdTaxonomyImporter
{
private static final String[] LANGUAGES = { "en" };
private Map genusMap = new HashMap();
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
class LanguageInitializer extends PatchedDefaultMutableDisplayable
{
public LanguageInitializer (final @Nonnull String[] languages,
final @Nonnull String englishName,
final @Nonnull BirdLocaleInfo localeInfo,
final @Nonnull String scientificName)
{
for (final String language : languages)
{
String localizedName = "";
if ("en".equals(language))
{
localizedName = englishName;
}
setDisplayName(localizedName, new Locale(language));
}
}
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
@Nonnull
public Taxonomy run (final @Nonnull Repository repository,
final @Nonnull String idPrefix)
throws Exception
{
init(repository);
final Taxonomy taxonomy = createTaxonomy(repository, idPrefix, BirdsOfIndia2009Importer.class, LANGUAGES);
final Taxon aves = createAves(taxonomy, idPrefix);
final InputStream is = getClass().getResourceAsStream(sourceResourceName);
final BufferedReader br = new BufferedReader(new InputStreamReader(is, "UTF-8"));
process(br, taxonomy, aves, birdLocaleInfo, idPrefix);
br.close();
taxonUniqueIdManager.close();
return taxonomy;
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
private void process (final @Nonnull BufferedReader br,
final @Nonnull Taxonomy taxonomy,
final @Nonnull Taxon aves,
final @Nonnull BirdLocaleInfo localeInfo,
final @Nonnull String idPrefix)
throws IOException, RepositoryException
{
initialize();
for (int i = 0; i < 10; i++)
{
br.readLine();
}
Taxon order = null;
Taxon family = null;
String orderPath = "";
String familyPath = "";
String previous = "";
String orderEn = "";
for (;;)
{
String s = br.readLine();
if (s == null)
{
break;
}
s = s.trim().replace("(Isabelline Shrike)W", "(Isabelline Shrike) W")
.replace("Green Avadavat V r", "Green Avadavat Vr")
.replace("Long-billed Bush Warbler N r", "Long-billed Bush Warbler Nr")
.replaceAll("Oenanthe picata.", "Oenanthe picata");
s = taxonTranslator.fixTypos(s);
log.trace(">>>> {}", s);
if (s.equals(""))
{
previous = s;
continue;
}
if (!s.contains(" ") || s.contains(","))
{
previous = s;
continue;
}
final Scanner scanner = new Scanner(s).useDelimiter(" ");
if (s.toLowerCase().startsWith("order"))
{
scanner.next();
final String orderName = capitalized(scanner.next());
log.info("**************** ORDER: *{}*", orderName);
orderPath = "/Animalia/Chordata/Aves/" + orderName;
if (!previous.equals("") && !previous.toLowerCase().startsWith("family"))
{
orderEn = previous;
}
order = findOrCreateSubTaxon(aves, idPrefix, orderPath).withRank(ORDER).
withScientificName(orderName).
withSpecificEpythet(orderName).
withDisplayName(orderEn, Locale.ENGLISH).
build();
}
else if (s.toLowerCase().startsWith("family"))
{
scanner.next();
final String familyName = capitalized(scanner.next());
log.info("**************** FAMILY: *{}*", familyName);
familyPath = orderPath + "/" + familyName;
family = findOrCreateSubTaxon(order, idPrefix, familyPath).withRank(FAMILY).
withScientificName(familyName).
withSpecificEpythet(familyName).
build();
}
else
{
log.info(">>>>> " + s);
final StringBuffer englishName = new StringBuffer();
String separator = "";
for (;;)
{
final String ss = scanner.next().replace("*", "");
if (ss.length() < 3)
{
break;
}
englishName.append(separator).append(ss);
separator = " ";
if (Arrays.asList("Lesser Noddy", "Sykes’s Warbler", "Chinese Leaf Warbler").contains(englishName.toString()))
{
break;
}
}
final String genusName = scanner.next();
final String speciesName = scanner.next().trim();
final String scientificName = genusName + " " + speciesName;
final String genusPath = familyPath + "/" + genusName;
final String speciesPath = genusPath + "/" + speciesName;
final LanguageInitializer commonNames = new LanguageInitializer(LANGUAGES, englishName.toString(), localeInfo, scientificName);
Taxon genus = genusMap.get(genusName);
if (genus == null)
{
genus = findOrCreateSubTaxon(family, idPrefix, genusPath).withRank(GENUS).
withScientificName(genusName).
withSpecificEpythet(genusName).
build();
}
final Taxon species = findOrCreateSubTaxon(genus, idPrefix, speciesPath).withRank(SPECIES).
withScientificName(genusName + " " + speciesName).
withSpecificEpythet(speciesName).
withDisplayNames(commonNames).
build();
}
}
}
}
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