it.tidalwave.bluebill.taxonomy.birds.BirdTaxonomyImporter Maven / Gradle / Ivy
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/***********************************************************************************************************************
*
* blueBill Resources - open source birding
* Copyright (C) 2009-2011 by Tidalwave s.a.s. (http://www.tidalwave.it)
*
***********************************************************************************************************************
*
* Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on
* an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the
* specific language governing permissions and limitations under the License.
*
***********************************************************************************************************************
*
* WWW: http://bluebill.tidalwave.it
* SCM: https://java.net/hg/bluebill~resources-src
*
**********************************************************************************************************************/
package it.tidalwave.bluebill.taxonomy.birds;
import java.util.Date;
import java.util.GregorianCalendar;
import javax.xml.datatype.DatatypeConfigurationException;
import javax.xml.datatype.DatatypeFactory;
import java.util.Set;
import it.tidalwave.bluebill.taxonomy.birds.impl.PatchedDefaultMutableDisplayable;
import java.util.Locale;
import it.tidalwave.role.MutableLocalizedDisplayable;
import it.tidalwave.role.LocalizedDisplayable;
import javax.annotation.CheckForNull;
import it.tidalwave.bluebill.taxonomy.Taxon.Builder;
import it.tidalwave.util.Id;
import it.tidalwave.netbeans.util.Locator;
import javax.annotation.Nonnull;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.SortedMap;
import java.util.SortedSet;
import java.util.TreeMap;
import java.util.TreeSet;
import java.io.IOException;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.Serializable;
import org.openide.util.Exceptions;
import org.openrdf.repository.Repository;
import org.openrdf.repository.RepositoryException;
import it.tidalwave.util.NotFoundException;
import it.tidalwave.bluebill.taxonomy.Taxonomy;
import it.tidalwave.bluebill.taxonomy.Taxon;
import it.tidalwave.bluebill.taxonomy.TaxonomyManager;
import it.tidalwave.util.Initializer;
import java.util.MissingResourceException;
import java.util.ResourceBundle;
import java.util.Scanner;
import javax.xml.datatype.XMLGregorianCalendar;
import org.openide.util.NbBundle;
import org.openrdf.concepts.dc.DcResource;
import lombok.extern.slf4j.Slf4j;
import static it.tidalwave.bluebill.taxonomy.Taxon.Rank.*;
/***********************************************************************************************************************
*
* @author Fabrizio Giudici
* @version $Id$
*
**********************************************************************************************************************/
@Slf4j
public abstract class BirdTaxonomyImporter implements Serializable
{
protected static final LocalizedDisplayable NO_COMMON_NAMES = new PatchedDefaultMutableDisplayable();
protected transient TaxonomyManager taxonomyManager = Locator.find(TaxonomyManager.class);
protected transient BirdLocaleInfo birdLocaleInfo;
protected transient final Map> childCache = new HashMap>();
protected transient TaxonUniqueIdManager taxonUniqueIdManager;
protected transient String sourceResourceName;
protected final SortedSet brokenSpecies = new TreeSet();
protected final SortedMap> speciesWithoutTranslations = new TreeMap>();
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
protected transient TaxonTranslator taxonTranslator = new TaxonTranslator()
{
@Override
public void loadConfiguration()
{
}
@Override
public String fixTypos (final @Nonnull String string)
{
return string;
}
};
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
protected void initialize()
throws IOException
{
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
public void setSourceResourceName (final @Nonnull String sourceResourceName)
throws FileNotFoundException
{
// if (!sourceFile.exists())
// {
// throw new FileNotFoundException(sourceFile.toString());
// }
this.sourceResourceName = sourceResourceName;
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
public void setTaxonTranslator (final @Nonnull TaxonTranslator taxonTranslator)
{
this.taxonTranslator = taxonTranslator;
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
public void setBirdLocaleInfo (final @Nonnull BirdLocaleInfo birdLocaleInfo)
{
this.birdLocaleInfo = birdLocaleInfo;
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
public void setIdentifierMapFile (final @Nonnull File identifierMapFile)
throws IOException
{
taxonUniqueIdManager = new TaxonUniqueIdManager(identifierMapFile);
taxonTranslator.loadConfiguration();
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
@Nonnull
public SortedSet getBrokenSpecies()
{
return brokenSpecies;
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
@Nonnull
public SortedMap> getSpeciesWithoutTranslations()
{
return Collections.unmodifiableSortedMap(speciesWithoutTranslations);
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
public void init (final @Nonnull Repository repository)
{
taxonomyManager = Locator.find(TaxonomyManager.class);
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
protected void addMissingTranslation (final @Nonnull String species, final @Nonnull String language)
{
List languages = speciesWithoutTranslations.get(species);
if (languages == null)
{
languages = new ArrayList();
speciesWithoutTranslations.put(species, languages);
}
languages.add(language);
}
/*******************************************************************************************************************
*
*
******************************************************************************************************************/
@Nonnull
protected Taxonomy createTaxonomy (final @Nonnull Repository repository,
final @Nonnull String id,
final @Nonnull Class bundleClass,
final @Nonnull String[] languages)
{
final ResourceBundle bundle = NbBundle.getBundle(bundleClass);
return taxonomyManager.createTaxonomy().withId(new Id(id)).
withDisplayNames(createDisplayable("en", bundle.getString("title"))).
inRepository(repository).
withInitializer(new Initializer()
{
@Override
public Taxonomy initialize (Taxonomy taxonomy)
{
final DcResource dcResource = taxonomy.getLookup().lookup(DcResource.class);
add(dcResource.getDcCreators(), "authors");
// dcResource.getDcContributors().add(null);
// dcResource.getDcCreators().add(null);
dcResource.setDcTitle(bundle.getString("title"));
dcResource.setDcDescription(bundle.getString("description"));
dcResource.getDcPublishers().add(bundle.getString("publishers"));
dcResource.getDcRights().add(bundle.getString("rights"));
final String dateAsString = bundle.getString("date");
final Scanner scanner = new Scanner(dateAsString).useDelimiter("-");
try
{
final XMLGregorianCalendar date = DatatypeFactory.newInstance().
newXMLGregorianCalendarDate(scanner.nextInt(),
scanner.nextInt(),
scanner.nextInt(),
0);
dcResource.getDcDates().add(date);
}
catch (DatatypeConfigurationException e)
{
log.error("", e);
}
for (final String language : languages)
{
dcResource.getDcLanguages().add(language);
}
return taxonomy;
}
private void add (final @Nonnull Set