src.it.unimi.dsi.big.util.FrontCodedStringBigList Maven / Gradle / Ivy
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/*
* DSI utilities
*
* Copyright (C) 2002-2020 Sebastiano Vigna
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by the Free
* Software Foundation; either version 3 of the License, or (at your option)
* any later version.
*
* This library is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
* for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program; if not, see
* This class is functionally identical to {@link FrontCodedStringList}, except for the larger size
* allowed.
*
* @see FrontCodedStringList
*/
public class FrontCodedStringBigList extends AbstractObjectBigList implements RandomAccess, Serializable {
public static final long serialVersionUID = 1;
/** The underlying {@link ByteArrayFrontCodedBigList}, or {@code null}. */
protected final ByteArrayFrontCodedBigList byteFrontCodedBigList;
/** The underlying {@link CharArrayFrontCodedBigList}, or {@code null}. */
protected final CharArrayFrontCodedBigList charFrontCodedBigList;
/** Whether this front-coded list is UTF-8 encoded. */
protected final boolean utf8;
/**
* Creates a new front-coded string list containing the character sequences returned by the given
* iterator.
*
* @param words an iterator returning {@linkplain CharSequence character sequences}.
* @param ratio the desired ratio.
* @param utf8 if true, the strings will be stored as UTF-8 byte arrays.
*/
public FrontCodedStringBigList(final Iterator words, final int ratio, final boolean utf8) {
this.utf8 = utf8;
if (utf8) {
byteFrontCodedBigList = new ByteArrayFrontCodedBigList(new ObjectIterator() {
@Override
public boolean hasNext() {
return words.hasNext();
}
@SuppressWarnings("null")
@Override
public byte[] next() {
return words.next().toString().getBytes(Charsets.UTF_8);
}
}, ratio);
charFrontCodedBigList = null;
} else {
charFrontCodedBigList = new CharArrayFrontCodedBigList(new ObjectIterator() {
@Override
public boolean hasNext() {
return words.hasNext();
}
@Override
public char[] next() {
final CharSequence s = words.next();
int i = s.length();
final char[] a = new char[i];
while (i-- != 0) a[i] = s.charAt(i);
return a;
}
}, ratio);
byteFrontCodedBigList = null;
}
}
/**
* Creates a new front-coded string list containing the character sequences contained in the given
* collection.
*
* @param c a collection containing {@linkplain CharSequence character sequences}.
* @param ratio the desired ratio.
* @param utf8 if true, the strings will be stored as UTF-8 byte arrays.
*/
public FrontCodedStringBigList(final Collection c, final int ratio, final boolean utf8) {
this(c.iterator(), ratio, utf8);
}
/**
* Returns whether this front-coded string list is storing its strings as UTF-8 encoded bytes.
*
* @return true if this front-coded string list is keeping its data as an array of UTF-8 encoded
* bytes.
*/
public boolean utf8() {
return utf8;
}
/**
* Returns the ratio of the underlying front-coded list.
*
* @return the ratio of the underlying front-coded list.
*/
public int ratio() {
return utf8 ? byteFrontCodedBigList.ratio() : charFrontCodedBigList.ratio();
}
/**
* Returns the element at the specified position in this front-coded as a mutable string.
*
* @param index an index in the list.
* @return a {@link MutableString} that will contain the string at the specified position. The
* string may be freely modified.
*/
@Override
public MutableString get(final long index) {
return MutableString.wrap(utf8 ? byte2Char(byteFrontCodedBigList.getArray(index), null) : charFrontCodedBigList.getArray(index));
}
/**
* Returns the element at the specified position in this front-coded list by storing it in a mutable
* string.
*
* @param index an index in the list.
* @param s a mutable string that will contain the string at the specified position.
*/
public void get(final long index, final MutableString s) {
if (utf8) {
final byte[] a = byteFrontCodedBigList.getArray(index);
s.length(countUTF8Chars(a));
byte2Char(a, s.array());
} else {
s.length(s.array().length);
int res = charFrontCodedBigList.get(index, s.array());
if (res < 0) {
s.length(s.array().length - res);
res = charFrontCodedBigList.get(index, s.array());
} else s.length(res);
}
}
/*
* The following methods are highly optimized UTF-8 converters exploiting the fact that since it was
* ourselves in the first place who created the coding, we can be sure it is correct.
*/
protected static int countUTF8Chars(final byte[] a) {
final int length = a.length;
int result = 0, b;
for (int i = 0; i < length; i++) {
b = (a[i] & 0xFF) >> 4;
if (b < 8) result++;
else if (b < 14) {
result++;
i++;
} else if (b < 15) {
result++;
i += 2;
} else {
// Surrogate pair (yuck!)
result += 2;
i += 4;
}
}
return result;
}
protected static char[] byte2Char(final byte[] a, char[] s) {
final int length = a.length;
if (s == null) s = new char[countUTF8Chars(a)];
int b, c, d, t;
for (int i = 0, j = 0; i < length; i++) {
b = a[i] & 0xFF;
t = b >> 4;
if (t < 8) s[j++] = (char)b;
else if (t < 14) {
c = a[++i] & 0xFF;
if ((c & 0xC0) != 0x80) throw new IllegalStateException("Malformed internal UTF-8 encoding");
s[j++] = (char)(((b & 0x1F) << 6) | (c & 0x3F));
} else if (t < 15) {
c = a[++i] & 0xFF;
d = a[++i];
if ((c & 0xC0) != 0x80 || (d & 0xC0) != 0x80) throw new IllegalStateException("Malformed internal UTF-8 encoding");
s[j++] = (char)(((b & 0x0F) << 12) | ((c & 0x3F) << 6) | ((d & 0x3F) << 0));
} else {
// Surrogate pair (yuck!)
final String surrogatePair = new String(a, i, 4, Charsets.UTF_8);
s[j++] = surrogatePair.charAt(0);
s[j++] = surrogatePair.charAt(1);
i += 3;
}
}
return s;
}
@Override
public ObjectBigListIterator listIterator(final long k) {
return new ObjectBigListIterator() {
ObjectBigListIterator i = utf8 ? byteFrontCodedBigList.listIterator(k) : charFrontCodedBigList.listIterator(k);
@Override
public boolean hasNext() {
return i.hasNext();
}
@Override
public boolean hasPrevious() {
return i.hasPrevious();
}
@Override
public MutableString next() {
return MutableString.wrap(utf8 ? byte2Char((byte[])i.next(), null) : (char[])i.next());
}
@Override
public MutableString previous() {
return MutableString.wrap(utf8 ? byte2Char((byte[])i.previous(), null) : (char[])i.previous());
}
@Override
public long nextIndex() {
return i.nextIndex();
}
@Override
public long previousIndex() {
return i.previousIndex();
}
};
}
@Override
public long size64() {
return utf8 ? byteFrontCodedBigList.size64() : charFrontCodedBigList.size64();
}
public static void main(final String[] arg) throws IOException, JSAPException, NoSuchMethodException {
final SimpleJSAP jsap = new SimpleJSAP(FrontCodedStringBigList.class.getName(), "Builds a front-coded string list reading from standard input a newline-separated ordered list of strings.", new Parameter[] {
new FlaggedOption("bufferSize", IntSizeStringParser.getParser(), "64Ki", JSAP.NOT_REQUIRED, 'b', "buffer-size", "The size of the I/O buffer used to read strings."),
new FlaggedOption("encoding", ForNameStringParser.getParser(Charset.class), "UTF-8", JSAP.NOT_REQUIRED, 'e', "encoding", "The file encoding."),
new FlaggedOption("ratio", IntSizeStringParser.getParser(), "4", JSAP.NOT_REQUIRED, 'r', "ratio", "The compression ratio."),
new Switch("utf8", 'u', "utf8", "Store the strings as UTF-8 byte arrays."),
new Switch("zipped", 'z', "zipped", "The string list is compressed in gzip format."),
new UnflaggedOption("frontCodedList", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename for the serialised front-coded list.") });
final JSAPResult jsapResult = jsap.parse(arg);
if (jsap.messagePrinted()) return;
final int bufferSize = jsapResult.getInt("bufferSize");
final int ratio = jsapResult.getInt("ratio");
final boolean utf8 = jsapResult.getBoolean("utf8");
final boolean zipped = jsapResult.getBoolean("zipped");
final String listName = jsapResult.getString("frontCodedList");
final Charset encoding = (Charset)jsapResult.getObject("encoding");
final Logger logger = LoggerFactory.getLogger(FrontCodedStringBigList.class);
final ProgressLogger pl = new ProgressLogger(logger);
pl.displayFreeMemory = true;
pl.displayLocalSpeed = true;
pl.itemsName = "strings";
pl.start("Reading strings...");
final FrontCodedStringBigList frontCodedStringBigList = new FrontCodedStringBigList(new LineIterator(new FastBufferedReader(new InputStreamReader(zipped ? new GZIPInputStream(System.in) : System.in, encoding), bufferSize), pl), ratio, utf8);
pl.done();
logger.info("Writing front-coded list to file...");
BinIO.storeObject(frontCodedStringBigList, listName);
logger.info("Completed.");
}
}