src.it.unimi.dsi.big.util.ShiftAddXorSignedStringMap Maven / Gradle / Ivy
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/*
* DSI utilities
*
* Copyright (C) 2008-2020 Sebastiano Vigna
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by the Free
* Software Foundation; either version 3 of the License, or (at your option)
* any later version.
*
* This library is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
* for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program; if not, see A minimal perfect hash function maps a set of string to an initial segment of the natural
* numbers, but will actually map any string to that segment. By signing
* each output value with a hash of the string, we get a dictionary-like functionality with a rate
* error that can be balanced with space occupancy (signatures can go from 1 to {@link Long#SIZE} bits).
*
*
For the kind of hash we use, see “Performance in practice of string hashing functions”, by
* M.V. Ramakrishna and Justin Zobel, Proc. of the Fifth International Conference on
* Database Systems for Advanced Applications, 1997, pages 215−223.
*
* @author Sebastiano Vigna
* @since 2.0
* @deprecated There are much better and faster hash functions.
*/
@Deprecated
public class ShiftAddXorSignedStringMap extends AbstractObject2LongFunction implements StringMap, Serializable {
private static final long serialVersionUID = 0L;
/** The underlying map. */
protected final Object2LongFunction function;
/** Signatures. */
protected final LongBigList signatures;
/** The width in bits of each signature. */
protected final int width;
/** The left shift to get only {@link #width} nonzero bits. */
protected final int shift;
/** The mask to get only {@link #width} nonzero bits. */
protected final long mask;
/** Creates a new shift-add-xor signed string map using a given hash map and 32-bit signatures.
*
* @param iterator an iterator enumerating a set of strings.
* @param map a minimal perfect hash for the strings enumerated by iterator; it must support {@link Function#size() size()}
* and have default return value -1.
*/
public ShiftAddXorSignedStringMap(final Iterator iterator, final Object2LongFunction map) {
this(iterator, map, 32);
}
/** Creates a new shift-add-xor signed string map using a given hash map.
*
* @param iterator an iterator enumerating a set of strings.
* @param map a minimal perfect hash for the strings enumerated by iterator; it must support {@link Function#size() size()}
* and have default return value -1.
* @param signatureWidth the width, in bits, of the signature of each string.
*/
public ShiftAddXorSignedStringMap(final Iterator iterator, final Object2LongFunction map, final int signatureWidth) {
CharSequence s;
this.function = map;
this.width = signatureWidth;
this.defRetValue = -1;
shift = Long.SIZE - width;
mask = width == Long.SIZE ? 0 : (1L << width) - 1;
final long n = map instanceof Size64 ? ((Size64)map).size64() : map.size();
(signatures = LongArrayBitVector.getInstance().asLongBigList(signatureWidth)).size(n);
for(long i = 0; i < n; i++) {
s = iterator.next();
signatures.set(map.getLong(s), signature(s));
}
if (iterator.hasNext()) throw new IllegalStateException("Iterator provides more than " + n + " elements");
}
private long signature(final CharSequence s) {
long h = 42;
for (int i = s.length(); i-- != 0;) h ^= (h << 5) + s.charAt(i) + (h >>> 2);
return (h >>> shift) ^ (h & mask);
}
private boolean checkSignature(final CharSequence s, final long index) {
//System.err.println(s + ": " + signatures.getLong(index) + " ?= " + signature(s));
return index >= 0 && index < function.size() && signatures.getLong(index) == signature(s);
}
@Override
public long getLong(final Object o) {
final CharSequence s = (CharSequence)o;
final long index = function.getLong(s);
return checkSignature(s, index) ? index : defRetValue;
}
@Override
public Long get(final Object o) {
final CharSequence s = (CharSequence)o;
final long index = function.getLong(s);
return checkSignature(s, index) ? Long.valueOf(index) : null;
}
@Override
public boolean containsKey(final Object o) {
final CharSequence s = (CharSequence)o;
return checkSignature(s, function.getLong(s));
}
@Override
@Deprecated
public int size() {
return signatures.size();
}
@Override
public long size64() {
return signatures.size64();
}
@Override
public ObjectBigList list() {
return null;
}
@SuppressWarnings("unchecked")
public static void main(final String[] arg) throws NoSuchMethodException, IOException, JSAPException, ClassNotFoundException {
final SimpleJSAP jsap = new SimpleJSAP(ShiftAddXorSignedStringMap.class.getName(), "Builds a shift-add-xor signed string map by reading a newline-separated list of strings and a function built on the same list of strings.",
new Parameter[] {
new FlaggedOption("bufferSize", JSAP.INTSIZE_PARSER, "64Ki", JSAP.NOT_REQUIRED, 'b', "buffer-size", "The size of the I/O buffer used to read strings."),
new FlaggedOption("encoding", ForNameStringParser.getParser(Charset.class), "UTF-8", JSAP.NOT_REQUIRED, 'e', "encoding", "The string file encoding."),
new Switch("zipped", 'z', "zipped", "The string list is compressed in gzip format."),
new FlaggedOption("width", JSAP.INTEGER_PARSER, Integer.toString(Integer.SIZE), JSAP.NOT_REQUIRED, 'w', "width", "The signature width in bits."),
new UnflaggedOption("function", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename of the function to be signed."),
new UnflaggedOption("map", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.REQUIRED, JSAP.NOT_GREEDY, "The filename of the resulting serialised signed string map."),
new UnflaggedOption("stringFile", JSAP.STRING_PARSER, JSAP.NO_DEFAULT, JSAP.NOT_REQUIRED, JSAP.NOT_GREEDY, "Read strings from this file instead of standard input."),
});
final JSAPResult jsapResult = jsap.parse(arg);
if (jsap.messagePrinted()) return;
final int bufferSize = jsapResult.getInt("bufferSize");
final String functionName = jsapResult.getString("function");
final String mapName = jsapResult.getString("map");
final String stringFile = jsapResult.getString("stringFile");
final Charset encoding = (Charset)jsapResult.getObject("encoding");
final int width = jsapResult.getInt("width");
final boolean zipped = jsapResult.getBoolean("zipped");
final InputStream inputStream = stringFile != null ? new FileInputStream(stringFile) : System.in;
final Iterator iterator = new LineIterator(new FastBufferedReader(new InputStreamReader(zipped ? new GZIPInputStream(inputStream) : inputStream, encoding), bufferSize));
final Object2LongFunction function = (Object2LongFunction)BinIO.loadObject(functionName);
final Logger logger = LoggerFactory.getLogger(ShiftAddXorSignedStringMap.class);
logger.info("Signing...");
BinIO.storeObject(new ShiftAddXorSignedStringMap(iterator, function, width), mapName);
if (stringFile != null) inputStream.close();
logger.info("Completed.");
}
}