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package it.unimi.dsi.stat;
/*
* DSI utilities
*
* Copyright (C) 2011-2020 Sebastiano Vigna
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by the Free
* Software Foundation; either version 3 of the License, or (at your option)
* any later version.
*
* This library is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
* for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program; if not, see .
*
*/
import it.unimi.dsi.Util;
import it.unimi.dsi.fastutil.Size64;
import it.unimi.dsi.fastutil.doubles.DoubleList;
/** A simple class digesting a stream of numbers and providing basic statistics about the stream.
* You just have to create an instance, call {@link #add(double)} or {@link #addAll(DoubleList)} to
* add elements.
*
* This class is thread-safe. All methods can be invoked concurrently.
*
* @author Sebastiano Vigna
*/
public class SummaryStats implements Size64 {
/** Mean */
private double a;
/** A statistics used to compute the variance (see here). */
private double q;
/** The minimum value in the stream. */
private double min = Double.POSITIVE_INFINITY;
/** The maximum value in the stream. */
private double max = Double.NEGATIVE_INFINITY;
/** The number of elements in the stream. */
private long size;
/** Adds a value to the stream.
*
* @param x the new value.
*/
public synchronized void add(double x) {
final double oldA = a;
a += (x - a) / ++size;
q += (x - a) * (x - oldA);
if (x < min) min = x ;
if (x > max) max = x ;
}
/** Adds values to the stream.
*
* @param a an array of new values.
*/
public void addAll(double[] a) {
for(double x: a) add(x);
}
/** Adds values to the stream.
*
* @param l a list of new values.
*/
public void addAll(final DoubleList l) {
for(double x: l) add(x);
}
/** Returns the mean of the values added so far.
*
* @return the mean of the values added so far.
*/
public synchronized double mean() {
return a;
}
/** Returns the sum of the values added so far.
*
* @return the sum of the values added so far.
*/
public synchronized double sum() {
return a * size;
}
/** Returns the sample variance of the values added so far.
*
* @return the sample variance of the values added so far.
* @see #variance()
*/
public synchronized double sampleVariance() {
return q / (size - 1);
}
/** Returns the variance of the values added so far.
*
* @return the variance of the values added so far.
* @see #sampleVariance()
*/
public synchronized double variance() {
return q / size;
}
/** Returns the sample standard deviation of the values added so far.
*
* @return the sample standard deviation of the values added so far.
* @see #standardDeviation()
*/
public synchronized double sampleStandardDeviation() {
return Math.sqrt(sampleVariance());
}
/** Returns the standard deviation of the values added so far.
*
* @return the standard deviation of the values added so far.
* @see #sampleStandardDeviation()
*/
public synchronized double standardDeviation() {
return Math.sqrt(variance());
}
/** Returns the sample relative standard deviation of the values added so far.
*
* @return the sample relative standard deviation of the values added so far.
* @see #relativeStandardDeviation()
*/
public synchronized double sampleRelativeStandardDeviation() {
return Math.sqrt(sampleVariance()) / mean();
}
/** Returns the relative standard deviation of the values added so far.
*
* @return the relative standard deviation of the values added so far.
* @see #sampleRelativeStandardDeviation()
*/
public synchronized double relativeStandardDeviation() {
return Math.sqrt(variance()) / mean();
}
/** Returns the minimum of the values added so far.
*
* @return the minimum of the values added so far.
*/
public synchronized double min() {
return min;
}
/** Returns the maximum of the values added so far.
*
* @return the maximum of the values added so far.
*/
public synchronized double max() {
return max;
}
/** Returns the number of values added so far.
*
* @return the number of values added so far.
*/
@Override
public synchronized long size64() {
return size;
}
@Override
@Deprecated
public int size() {
throw new UnsupportedOperationException();
}
@Override
public String toString() {
return "[size: " + Util.format(size64()) + " min: " + min + " max: " + max + " \u03BC: " + mean() + " \u03C3: " + sampleStandardDeviation() + " (" + Util.format(100 * sampleRelativeStandardDeviation()) + " %)]";
}
}