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Open-source Java libraries, supporting generalized smart arrays and matrices with elements
of any types, including a wide set of 2D-, 3D- and multidimensional image processing
and other algorithms, working with arrays and matrices.
/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2024 Daniel Alievsky, AlgART Laboratory (http://algart.net)
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in all
* copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
* SOFTWARE.
*/
package net.algart.contours;
import net.algart.math.rectangles.IRectangleFinder;
import net.algart.arrays.*;
import net.algart.contexts.InterruptionException;
import net.algart.math.IRectangularArea;
import java.util.Locale;
import java.util.Objects;
import java.util.function.BooleanSupplier;
import java.util.stream.IntStream;
/**
* Joiner of {@link Contours contours}.
* Note that this class guarantees full 100% joining of only 4-connected contours (external and internal).
* Contours of 8-connected objects, in some situations, are not joined completely.
* It allows to use more simple and efficient algorithm with a guarantee that
* it will not require a lot of memory (more than necessary for storing results
* and the largest matrix, necessary for "drawing" any source contour).
*/
public final class ContourJoiner {
public enum JoiningOrder {
UNORDERED("unordered") {
@Override
void sortIndexes(ContourJoiner joiner, int[] indexes, int count) {
}
},
NATURAL("natural") {
@Override
void sortIndexes(ContourJoiner joiner, int[] indexes, int count) {
java.util.Arrays.parallelSort(indexes, 0, count);
}
},
SMALL_FIRST("small-first") {
@Override
void sortIndexes(ContourJoiner joiner, int[] indexes, int count) {
ArraySorter.getQuickSorter().sortIndexes(indexes, 0, count,
(firstIndex, secondIndex) -> {
final int diff1 = joiner.allMaxY[firstIndex] - joiner.allMinY[firstIndex];
final int diff2 = joiner.allMaxY[secondIndex] - joiner.allMinY[secondIndex];
return diff1 < diff2 || (diff1 == diff2 && firstIndex < secondIndex);
});
}
},
LARGE_FIRST("large-first") {
@Override
void sortIndexes(ContourJoiner joiner, int[] indexes, int count) {
ArraySorter.getQuickSorter().sortIndexes(indexes, 0, count,
(firstIndex, secondIndex) -> {
final int diff1 = joiner.allMaxY[firstIndex] - joiner.allMinY[firstIndex];
final int diff2 = joiner.allMaxY[secondIndex] - joiner.allMinY[secondIndex];
return diff1 > diff2 || (diff1 == diff2 && firstIndex > secondIndex);
});
}
};
private final String prettyName;
JoiningOrder(String prettyName) {
this.prettyName = prettyName;
}
abstract void sortIndexes(ContourJoiner joiner, int[] indexes, int count);
}
public static final int MAX_GRID_STEP_LOG = 30;
// - helps to avoid problems with overflow
private static final int MIN_RECOMMENDED_GRID_STEP_LOG = 4;
// - usually even faster than 3: processing squares 2x2 provides almost the same precision,
// but number of service operations is less
private static final int MAX_RECOMMENDED_GRID_MATRIX_SIZE = 32 * 1024 * 1024;
// - matrix of long[] + int[], so ~384 MB
private static final int EMPTY_POSITION = -1;
// - must be -1! it is used while operations with bits
private static final int REPACKING_DEFERRED_QUEUE_STEP = 16;
private static final int REVIVING_VISITED_GRID_STEP = 64;
private static final int CHECK_INTERRUPTION_STEP = 256;
private final int DETAILED_DEBUG_LEVEL = 0;
// - must be 0 for normal work; other values leads to a lot of debug printing and extremely slows down work
private JoiningOrder joiningOrder = JoiningOrder.UNORDERED;
// - affects only to the order of resulting contours; non-trivial order usually decrease performance
private boolean packResultContours = true;
private int measureTimingLevel = 0;
private BooleanSupplier interrupter = null;
private final Contours contours;
private final Contours result;
private final boolean useGrid;
private final int gridStepLog;
private final int numberOfContours;
private final int[] reindexedLabels;
private final JoinedLabelsLists joinedLists;
private final int maxNumberOfJoinedContours;
private final boolean[] alreadyProcessed;
final int[] allMinX;
final int[] allMaxX;
final int[] allMinY;
final int[] allMaxY;
private final boolean[] allInternal;
private volatile IRectangularArea containingRectangle = null;
private int[] clusterContours = new int[256];
private final int[] clusterContoursOffsets;
private final int[] indexesOfClusterContours;
// - simplified equivalent of Contours class for storing "cluster":
// set of contours having the same reindexed label (candidates to join);
// clusterContours contains points (x,y) of unpacked cluster contours
private final int[] reverseIndexesOfContoursInCluster;
private final int[] sortedIndexesOfClusterContours;
private final IntArrayTranslatingAppender sortedIndexesOfClusterContoursAppender;
private int numberOfClusterContours = 0;
private final boolean[] possibleNeighboursInClusterSet;
private final int[] possibleNeighboursIndexesInCluster;
private int numberOfPossibleNeighbours = 0;
private final long[] visitedGrid;
// visitedGridCells[y,x] is a bitmap 8x8, where every element is 1 if one of the contours, forming
// the current contour as result of joining, intersects corresponding rectangle m * m, m = 2^(gridStepLog-3)/
// In particular, visitedGridCells[y,x]!=0L when this contours intersects rectangle 8m * 8m
// at position x * 2^gridStepLog, y * 2^gridStepLog
private final int[] indexesOfNonZeroVisitedGridElements;
private int nonZeroVisitedGridElementsCount = 0;
private int[] compressedContoursPositions = new int[256];
// - unlike clusterContours, consists of not points, but positions (offset in matrix): y * gridDimX + x
private long[] compressedContoursBitMaps8x8 = new long[256];
private final int[] compressedContoursPositionsOffsets;
private int compressedContoursPositionsLength = 0;
// - should be equal to compressedClusterPositionsOffsets[numberOfClusterContours-1]
private int visitedGridMinX = -1;
private int visitedGridMaxX = -1;
private int visitedGridMinY = -1;
private int visitedGridMaxY = -1;
private int visitedGridDimX = -1;
private int visitedGridDimY = -1;
private int visitedGridSize = -1;
private final Contours deferredContours = Contours.newInstance();
private int deferredContoursStart = 0;
private final ContourHeader currentHeader = new ContourHeader();
private boolean currentInternal = false;
private int currentLabel = -1;
private int reindexedCurrentLabel = -1;
private int currentIndex = -1;
private int[] current = JArrays.EMPTY_INTS;
// - used also in as a work memory in buildClusterWithSameReindexedLabel
private boolean[] currentUsage = JArrays.EMPTY_BOOLEANS;
private int currentNumberOfPoints = 0;
private int currentLength = 0;
int currentMinX = -1;
int currentMaxX = -1;
int currentMinY = -1;
int currentMaxY = -1;
private int[] currentPositionsForXPlusSegments;
private int[] currentPositionsForYPlusSegments;
// - in particular, currentPositionsForXPlusSegments is a matrix, element (x,y) of which contains position p,
// such that the segment p->p+1 of the current contour is the segment between points (x,y)-(x+1,y),
// or EMPTY_POSITION if the current contour does not contain this segment
private final MutableIntArray currentIndexesOfJoinedContours = Arrays.SMM.newEmptyIntArray();
// - for debugging needs
private final IRectangleFinder rectangleFinder;
private boolean joinedInternal = false;
private int joinedIndex = -1;
private int[] joined = null;
private int joinedOffset = 0;
private boolean[] joinedUsage = JArrays.EMPTY_BOOLEANS;
private int joinedNumberOfPoints = 0;
private int joinedLength = 0;
private int joinedMinX = -1;
private int joinedMaxX = -1;
private int joinedMinY = -1;
private int joinedMaxY = -1;
private int intersectionMinX = -1;
private int intersectionMinY = -1;
private int intersectionDimX = -1;
private int intersectionDimY = -1;
private int intersectionDiffX = -1;
private int intersectionDiffY = -1;
private int intersectionMatrixSize = -1;
private int[] joinedPositionsForXPlusSegments;
private int[] joinedPositionsForYPlusSegments;
private int[] joinResult = JArrays.EMPTY_INTS;
private boolean joinResultInternal = false;
private int joinResultNumberOfPoints = 0;
private int[] joinAdditionalResult = JArrays.EMPTY_INTS;
private boolean joinAdditionalResultInternal = false;
private int joinAdditionalResultNumberOfPoints = 0;
private int[] workPackedPoints = JArrays.EMPTY_INTS;
private long tCreatingInitialization = 0;
private long tCreatingJoinedLists = 0;
private long tCreatingAllocating = 0;
private long tCreatingAllocatingMatrices = 0;
private long tCreatingAnalysingRectangles = 0;
private long tCreatingClusterRectangles = 0;
private long tTotalWork = 0;
private long tSimple = 0;
private long tBuildingCluster = 0;
private long tPreprocessingGrid = 0;
private long tInitializeNewCurrent = 0;
private long tFindInitialNeighbours = 0;
private long tReadingCurrent = 0;
private long tAnalysing = 0;
private long tRevivingGrid = 0;
private long tJoiningCheckingGridSuccess = 0;
private long tJoiningCheckingGridFail = 0;
private long tJoiningReadingNewJoined = 0;
private long tJoiningScanning1Success = 0;
private long tJoiningScanning1Fail = 0;
private long tJoiningScanning2Success = 0;
private long tJoiningScanning2Fail = 0;
private long tJoiningSwitching = 0;
private long tJoiningAddingToGridAndNeighbours = 0;
private long tWritingContours = 0;
private long tOffsetOfMinX = 0;
private long tFindFreeSegment = 0;
private long tFindFreeUnusedSegment = 0;
private int sMinCheckedContoursCount = Integer.MAX_VALUE;
private int sMaxCheckedContoursCount = 0;
private long sSumCheckedContoursCount = 0;
private int sNumberOfCheckedContoursLoops = 0;
private int sMinJoinedContoursCount = Integer.MAX_VALUE;
private int sMaxJoinedContoursCount = 0;
private long sSumJoinedContoursCount = 0;
private int sNumberOfJoinedContours = 0;
private int sMinDeferredContoursCount = Integer.MAX_VALUE;
private int sMaxDeferredContoursCount = 0;
private long sSumDeferredContoursCount = 0;
private long sNumberOfDeferredContoursChecks = 0;
private long sTotalNumberOfDeferredContours = 0;
private long sNumberOfScanningCurrent = 0;
private long sNumberOfSuccessfulScanningCurrent = 0;
private long sNumberOfScanningJoined = 0;
private long sNumberOfSuccessfulScanningJoined = 0;
private ContourJoiner(Contours contours, Integer gridStepLog, int[] joinedLabelsMap, int defaultJoinedLabel) {
this.contours = Objects.requireNonNull(contours, "Null contours");
if (defaultJoinedLabel < 0) {
throw new IllegalArgumentException("Negative defaultJoinedLabel = " + defaultJoinedLabel);
}
if (gridStepLog != null) {
if (gridStepLog < 0) {
throw new IllegalArgumentException("Negative gridStepLog");
}
if (gridStepLog != 0 && (gridStepLog < 3 || gridStepLog > MAX_GRID_STEP_LOG)) {
// - why 3? 2^3 * 2^3 = 64: number of bits in 1 long value
throw new IllegalArgumentException("gridStepLog (grid step logarithm) = " + gridStepLog
+ " is non-zero and is out of required range 3.." + MAX_GRID_STEP_LOG);
}
useGrid = gridStepLog != 0;
} else {
useGrid = true;
}
long t1 = System.nanoTime();
this.result = Contours.newInstance();
this.numberOfContours = contours.numberOfContours();
assert numberOfContours <= Contours.MAX_NUMBER_OF_CONTOURS;
this.reindexedLabels = IntStream.range(0, contours.numberOfContours()).parallel().map(
contourIndex -> reindex(contours.getObjectLabel(contourIndex), joinedLabelsMap, defaultJoinedLabel))
.toArray();
long t2 = System.nanoTime();
tCreatingInitialization = t2 - t1;
this.joinedLists = new JoinedLabelsLists(reindexedLabels);
// - must be built BEFORE filling allMin/Max: we need correct hasNeighboursToJoin() method
this.maxNumberOfJoinedContours = joinedLists.maxListLength; // maxJoinedListLength(joinedLabelsLists);
assert maxNumberOfJoinedContours <= numberOfContours;
long t3 = System.nanoTime();
tCreatingJoinedLists = t3 - t2;
this.alreadyProcessed = new boolean[numberOfContours];
// - zero-filled by Java
this.clusterContoursOffsets = new int[maxNumberOfJoinedContours + 1];
this.compressedContoursPositionsOffsets = new int[maxNumberOfJoinedContours + 1];
this.indexesOfClusterContours = new int[maxNumberOfJoinedContours];
this.sortedIndexesOfClusterContours = new int[maxNumberOfJoinedContours];
this.reverseIndexesOfContoursInCluster = new int[numberOfContours];
this.possibleNeighboursIndexesInCluster = new int[maxNumberOfJoinedContours];
this.possibleNeighboursInClusterSet = new boolean[numberOfContours];
// - zero-filled by Java
this.allMinX = new int[numberOfContours];
this.allMaxX = new int[numberOfContours];
this.allMinY = new int[numberOfContours];
this.allMaxY = new int[numberOfContours];
this.allInternal = new boolean[numberOfContours];
final int[] allMatrixSize = new int[numberOfContours];
// - zero-filled by Java
long t4 = System.nanoTime();
tCreatingAllocating += t4 - t3;
IntStream.range(0, (numberOfContours + 255) >>> 8).parallel().forEach(block -> {
final ContourHeader header = new ContourHeader();
for (int i = block << 8, to = (int) Math.min((long) i + 256, numberOfContours); i < to; i++) {
contours.getHeader(header, i);
allInternal[i] = header.isInternalContour();
if (!hasNeighboursToJoin(i)) {
continue;
// - skip checking this contour at all: we will not process it;
// it must be AFTER initializing this.joinedLists
}
final int minX = header.minX();
final int maxX = header.maxX();
final int minY = header.minY();
final int maxY = header.maxY();
allMinX[i] = minX;
allMaxX[i] = maxX;
allMinY[i] = minY;
allMaxY[i] = maxY;
final int diffX = maxX - minX;
final int diffY = maxY - minY;
if (diffX < 0 || diffY < 0) {
throw new AssertionError("Overflow in sizes of containing rectangle for contour #"
+ i + "; it must be impossible due to check of Contour2DArray.MAX_ABSOLUTE_COORDINATE");
}
final long matrixSize = (1 + (long) diffX) * (1 + (long) diffY);
if (matrixSize > Integer.MAX_VALUE) {
throw new TooLargeArrayException("Containing rectangles of contours must have area "
+ "<= Integer.MAX_VALUE pixels, but contour #" + i + " is "
+ (1 + (long) diffX) + "x" + (1 + (long) diffY));
}
allMatrixSize[i] = (int) matrixSize;
}
});
int maxContainingMatrixSize = 0;
for (int k = 0; k < numberOfContours; k++) {
int matrixSize = allMatrixSize[k];
if (matrixSize > maxContainingMatrixSize) {
maxContainingMatrixSize = matrixSize;
}
// - initial estimation for positions matrices; in normal situation,
// there should not be necessary to reallocate them in ensureCapacityForPositionsMatrices
}
long t5 = System.nanoTime();
tCreatingAnalysingRectangles += t5 - t4;
final int gridMatrixSize;
if (useGrid) {
joinedLists.initializeNonEmptyClusterRectangles(allMinX, allMaxX, allMinY, allMaxY);
int chosenGridStepLog;
if (gridStepLog != null) {
chosenGridStepLog = gridStepLog;
gridMatrixSize = (int) joinedLists.maxClusterGridMatrixSize(chosenGridStepLog, true);
} else {
chosenGridStepLog = MIN_RECOMMENDED_GRID_STEP_LOG;
long size = joinedLists.maxClusterGridMatrixSize(chosenGridStepLog, false);
while (chosenGridStepLog < MAX_GRID_STEP_LOG && size > MAX_RECOMMENDED_GRID_MATRIX_SIZE) {
chosenGridStepLog++;
size = joinedLists.maxClusterGridMatrixSize(chosenGridStepLog, false);
}
assert size == (int) size : "impossible: after division by 2^" + MAX_GRID_STEP_LOG
+ ", the cluster size is still > " + MAX_RECOMMENDED_GRID_MATRIX_SIZE;
gridMatrixSize = (int) size;
}
this.gridStepLog = chosenGridStepLog;
// - we need a separate check: there is no guarantee that b/16-a/16+1 <= (b-a)/16+1
} else {
this.gridStepLog = -1;
gridMatrixSize = -1;
}
long t6 = System.nanoTime();
tCreatingClusterRectangles += t6 - t5;
this.currentPositionsForXPlusSegments = new int[maxContainingMatrixSize];
this.currentPositionsForYPlusSegments = new int[maxContainingMatrixSize];
this.joinedPositionsForXPlusSegments = new int[maxContainingMatrixSize];
this.joinedPositionsForYPlusSegments = new int[maxContainingMatrixSize];
this.sortedIndexesOfClusterContoursAppender = new IntArrayTranslatingAppender(
sortedIndexesOfClusterContours, i -> indexesOfClusterContours[i]);
this.rectangleFinder = IRectangleFinder.getEmptyInstance();
this.rectangleFinder.setIndexActual(i -> !alreadyProcessed[indexesOfClusterContours[i]]);
this.visitedGrid = useGrid ? new long[gridMatrixSize] : null;
this.indexesOfNonZeroVisitedGridElements = useGrid ? new int[gridMatrixSize] : null;
long t7 = System.nanoTime();
// - in constructor we cannot use nanoTime() method of this object
tCreatingAllocatingMatrices = t7 - t6;
}
public static ContourJoiner newInstance(Contours contours, Integer gridStepLog, int[] joinedLabelsMap) {
Objects.requireNonNull(joinedLabelsMap, "Null joinedLabelsMap");
return new ContourJoiner(contours, gridStepLog, joinedLabelsMap, 157);
}
public static ContourJoiner newInstance(
Contours contours,
Integer gridStepLog,
int[] joinedLabelsMap,
int defaultJoinedLabel) {
return new ContourJoiner(contours, gridStepLog, joinedLabelsMap, defaultJoinedLabel);
}
public JoiningOrder getJoiningOrder() {
return joiningOrder;
}
public ContourJoiner setJoiningOrder(JoiningOrder joiningOrder) {
this.joiningOrder = Objects.requireNonNull(joiningOrder, "Null joining order");
return this;
}
public boolean isPackResultContours() {
return packResultContours;
}
public ContourJoiner setPackResultContours(boolean packResultContours) {
this.packResultContours = packResultContours;
return this;
}
public int getMeasureTimingLevel() {
return measureTimingLevel;
}
public ContourJoiner setMeasureTimingLevel(int measureTimingLevel) {
this.measureTimingLevel = measureTimingLevel;
return this;
}
public BooleanSupplier getInterrupter() {
return interrupter;
}
public ContourJoiner setInterrupter(BooleanSupplier interrupter) {
this.interrupter = interrupter;
return this;
}
public IRectangularArea containingRectangle() {
IRectangularArea containingRectangle = this.containingRectangle;
if (containingRectangle == null && numberOfContours > 0) {
int containingMinX = Integer.MAX_VALUE;
int containingMaxX = Integer.MIN_VALUE;
int containingMinY = Integer.MAX_VALUE;
int containingMaxY = Integer.MIN_VALUE;
final ContourHeader header = new ContourHeader();
for (int k = 0; k < numberOfContours; k++) {
final int minX, maxX, minY, maxY;
if (hasNeighboursToJoin(k)) {
minX = allMinX[k];
maxX = allMaxX[k];
minY = allMinY[k];
maxY = allMaxY[k];
} else {
contours.getHeader(header, k);
minX = header.minX();
maxX = header.maxX();
minY = header.minY();
maxY = header.maxY();
}
if (minX < containingMinX) {
containingMinX = minX;
}
if (maxX > containingMaxX) {
containingMaxX = maxX;
}
if (minY < containingMinY) {
containingMinY = minY;
}
if (maxY > containingMaxY) {
containingMaxY = maxY;
}
}
this.containingRectangle = containingRectangle = IRectangularArea.valueOf(
containingMinX, containingMinY, containingMaxX, containingMaxY);
}
return containingRectangle;
}
public Contours joinContours() {
long t1 = System.nanoTime();
JArrays.fill(alreadyProcessed, false);
// - to be on the safe side (for multiple calls)
result.clear();
for (int k = 0; k < numberOfContours; k++) {
addContourAndItsContinuations(k);
}
long t2 = System.nanoTime();
tTotalWork = t2 - t1;
return result;
}
public boolean needToJoin(int objectIndex1, int objectIndex2) {
return reindexedLabels[objectIndex1] == reindexedLabels[objectIndex2];
}
public boolean hasNeighboursToJoin(int objectIndex) {
return joinedLists.hasNeighboursToJoin(reindexedLabels[objectIndex]);
}
public String timingInfo() {
final long tActualJoining = tRevivingGrid
+ tJoiningReadingNewJoined
+ tJoiningScanning1Success + tJoiningScanning1Fail
+ tJoiningScanning2Success + +tJoiningScanning2Fail
+ tJoiningSwitching + tJoiningAddingToGridAndNeighbours;
final long tCreating = tCreatingInitialization + tCreatingJoinedLists
+ tCreatingAnalysingRectangles + tCreatingAllocating
+ tCreatingClusterRectangles + tCreatingAllocatingMatrices;
final String common = String.format(Locale.US,
"%d contours joined to %d ones (%s, %s) in %.3f ms (%.6f ms/contour, "
+ "maximal number of joined %d): "
+ "\n %.3f creating (%.3f initialization + %.3f joined lists "
+ "+ %.3f rectangles + %.3f clusters + %.3f and %.3f allocation);"
+ "\n %.3f processing",
contours.numberOfContours(), result.numberOfContours(),
joiningOrder.prettyName,
useGrid ? "grid cells " + (1 << gridStepLog) + "x" + (1 << gridStepLog) : "no grid",
(tCreating + tTotalWork) * 1e-6,
((tCreating + tTotalWork) * 1e-6) / contours.numberOfContours(),
maxNumberOfJoinedContours,
tCreating * 1e-6,
tCreatingInitialization * 1e-6,
tCreatingJoinedLists * 1e-6,
tCreatingAnalysingRectangles * 1e-6,
tCreatingClusterRectangles * 1e-6,
tCreatingAllocating * 1e-6,
tCreatingAllocatingMatrices * 1e-6,
tTotalWork * 1e-6);
if (measureTimingLevel == 0) {
return common;
}
final String newCurrent = String.format(Locale.US, "%s:"
+ "\n %.3f simple adding (no other contours with same label),"
+ "\n %.3f building cluster: unpacking contours with the same reindexed label,"
+ "\n %.3f preprocessing grid (reallocating, compressing contours),"
+ "\n %.3f initializing new current contour,"
+ "\n %.3f finding initial possible neighbours,"
+ "\n %.3f reading current contour,",
common,
tSimple * 1e-6,
tBuildingCluster * 1e-6,
tPreprocessingGrid * 1e-6,
tInitializeNewCurrent * 1e-6,
tFindInitialNeighbours * 1e-6,
tReadingCurrent * 1e-6);
final String statistics = String.format(Locale.US,
"\n number of checks of contours before joining 1 new contour: "
+ "min %d, max %d, mean %.3f, total %d"
+ "\n number of contours, joined to single one: "
+ "min %d, max %d, mean %.3f, total %d"
+ "\n number of deferred contours: "
+ "min %d, max %d, mean %.3f, total %d"
+ "\n number of successful/total scannings current contour: %d/%d"
+ "\n number of successful/total scannings joined contour: %d/%d",
sMinCheckedContoursCount, sMaxCheckedContoursCount,
sSumCheckedContoursCount / (double) sNumberOfCheckedContoursLoops,
sSumCheckedContoursCount,
sMinJoinedContoursCount, sMaxJoinedContoursCount,
sSumJoinedContoursCount / (double) sNumberOfJoinedContours,
sSumJoinedContoursCount,
sMinDeferredContoursCount, sMaxDeferredContoursCount,
sSumDeferredContoursCount / (double) sNumberOfDeferredContoursChecks,
sTotalNumberOfDeferredContours,
sNumberOfSuccessfulScanningCurrent, sNumberOfScanningCurrent,
sNumberOfSuccessfulScanningJoined, sNumberOfScanningJoined);
if (measureTimingLevel == 1) {
return String.format(Locale.US, "%s"
+ "\n %.3f analysis,"
+ "\n %.3f writing result contours%s",
newCurrent,
tAnalysing * 1e-6,
tWritingContours * 1e-6,
statistics);
}
return String.format(Locale.US, "%s"
+ "\n %.3f analysis, including:"
+ "\n %.6f quick checks (including rectangles)%s,"
+ "\n %.6f actual joining, including:"
+ "\n %.6f reviving visited grid,"
+ "\n %.6f initializing/reading 2nd (joined) contour,"
+ "\n %.6f/%.6f scanning current contour (success/fail),"
+ "\n %.6f/%.6f scanning joined contour (success/fail),"
+ "\n %.6f switching algorithm,"
+ "\n %.6f adding information to neighbours lists/grid,%s"
+ "\n %.3f writing result contours%s",
newCurrent,
tAnalysing * 1e-6,
(tAnalysing - tActualJoining) * 1e-6,
measureTimingLevel < 3 ? "" :
String.format(Locale.US, ", including %.6f/%.6f checking grid (success/fail) ",
tJoiningCheckingGridSuccess * 1e-6, tJoiningCheckingGridFail * 1e-6),
tActualJoining * 1e-6,
tRevivingGrid * 1e-6,
tJoiningReadingNewJoined * 1e-6,
tJoiningScanning1Success * 1e-6, tJoiningScanning1Fail * 1e-6,
tJoiningScanning2Success * 1e-6, tJoiningScanning2Fail * 1e-6,
tJoiningSwitching * 1e-6,
tJoiningAddingToGridAndNeighbours * 1e-6,
measureTimingLevel < 3 ? "" :
String.format(Locale.US, " including: "
+ "\n %.6f searching the leftmost point,"
+ "\n %.6f finding free segment (1st iteration),"
+ "\n %.6f finding free unused segment (further iterations),",
tOffsetOfMinX * 1e-6,
tFindFreeSegment * 1e-6,
tFindFreeUnusedSegment * 1e-6),
tWritingContours * 1e-6,
statistics);
}
private void addContourAndItsContinuations(final int contourIndex) {
if (alreadyProcessed[contourIndex]) {
return;
}
long t1 = nanoTime1();
if (!hasNeighboursToJoin(contourIndex)) {
contours.getHeader(currentHeader, contourIndex);
currentHeader.clearContourTouchingMatrixBoundary();
// - not relevant for joined contours
currentHeader.setObjectLabel(reindexedLabels[contourIndex]);
if (packResultContours) {
final ContourLength contourLength = new ContourLength();
final long lengthAndOffset = contours.getContourLengthAndOffset(contourIndex);
workPackedPoints = Contours.packContourAndReallocateResult(
workPackedPoints, contourLength,
contours.points,
Contours.extractOffset(lengthAndOffset),
Contours.extractLength(lengthAndOffset));
result.addContour(currentHeader, workPackedPoints, 0, contourLength.getArrayLength());
} else {
result.addContour(contours, contourIndex);
}
tSimple += nanoTime1() - t1;
return;
// - this contour has no stitched neighbours
}
buildClusterWithSameReindexedLabel(contourIndex);
long t2 = nanoTime1();
tBuildingCluster += t2 - t1;
preprocessCompressedContours();
long t3 = nanoTime1();
tPreprocessingGrid += t3 - t2;
joinCluster();
}
private void buildClusterWithSameReindexedLabel(int contourIndex) {
int count = 0;
int pointsLength = 0;
final ContourLength contourLength = new ContourLength();
final int reindexed = reindexedLabels[contourIndex];
for (int i = joinedLists.offsets[reindexed], to = joinedLists.offsets[reindexed + 1]; i < to; i++) {
final int index = joinedLists.indexes[i];
assert index >= contourIndex : "invalid order in lists, built by buildJoinedLists()";
indexesOfClusterContours[count] = index;
reverseIndexesOfContoursInCluster[index] = count;
current = contours.unpackContourAndReallocateResult(current, contourLength, index);
final int length = contourLength.getArrayLength();
ensureCapacityForUnpackedClusterAndReallocate((long) pointsLength + (long) length);
System.arraycopy(current, 0, clusterContours, pointsLength, length);
clusterContoursOffsets[count] = pointsLength;
pointsLength += length;
count++;
}
clusterContoursOffsets[count] = pointsLength;
// - single extra element
assert count == joinedLists.length(reindexed);
if (count <= 1) {
throw new AssertionError("Empty cluster due to incorrect hasNeighboursToJoin: " + count);
}
this.numberOfClusterContours = count;
if (useGrid) {
int clusterMinX = joinedLists.clusterMinX[reindexed];
int clusterMaxX = joinedLists.clusterMaxX[reindexed];
int clusterMinY = joinedLists.clusterMinY[reindexed];
int clusterMaxY = joinedLists.clusterMaxY[reindexed];
initializeVisitedGrid(clusterMinX, clusterMaxX, clusterMinY, clusterMaxY);
}
}
private void initializeVisitedGrid(int clusterMinX, int clusterMaxX, int clusterMinY, int clusterMaxY) {
assert useGrid;
this.visitedGridMinX = clusterMinX >> gridStepLog;
this.visitedGridMaxX = clusterMaxX >> gridStepLog;
this.visitedGridMinY = clusterMinY >> gridStepLog;
this.visitedGridMaxY = clusterMaxY >> gridStepLog;
// - note: it is floor(xxx / 2^gridStepLog) even for negative numbers
this.visitedGridDimX = this.visitedGridMaxX - this.visitedGridMinX + 1;
this.visitedGridDimY = this.visitedGridMaxY - this.visitedGridMinY + 1;
final long gridMatrixSize = (long) visitedGridDimX * (long) visitedGridDimY;
if (gridMatrixSize > visitedGrid.length) {
throw new AssertionError("Too large cluster: " + gridMatrixSize
+ " > maximal length " + visitedGrid.length + ", found in the constructor");
}
this.visitedGridSize = (int) gridMatrixSize;
}
private void preprocessCompressedContours() {
if (useGrid) {
compressAllClusterContours();
nonZeroVisitedGridElementsCount = 0;
java.util.Arrays.fill(visitedGrid, 0, visitedGridSize, 0L);
}
}
private void cleanupVisitedGrid() {
if (!useGrid) {
return;
}
// System.out.println(nonZeroVisitedGridElementsCount + "/" + visitedGridSize + ", " + numberOfDeferredContours());
if (nonZeroVisitedGridElementsCount >= visitedGridSize >> 1) {
java.util.Arrays.fill(visitedGrid, 0, visitedGridSize, 0L);
// - the following loop will be slower than the simplest filling
} else {
for (int k = 0; k < nonZeroVisitedGridElementsCount; k++) {
visitedGrid[indexesOfNonZeroVisitedGridElements[k]] = 0L;
}
}
nonZeroVisitedGridElementsCount = 0;
if (DETAILED_DEBUG_LEVEL >= 1) {
for (int k = 0; k < visitedGridSize; k++) {
if (visitedGrid[k] != 0L) {
throw new AssertionError("visitedGrid was not cleaned properly");
}
}
}
}
private void compressAllClusterContours() {
assert useGrid : "this function must not be used when grid is not used: gridStepLog = " + gridStepLog;
compressedContoursPositionsLength = 0;
compressedContoursPositionsOffsets[0] = 0;
for (int k = 0; k < numberOfClusterContours; k++) {
compressClusterContour(k);
compressedContoursPositionsOffsets[k + 1] = compressedContoursPositionsLength;
}
}
private void reviveVisitedGridForCurrentContour() {
if (useGrid) {
long t1 = nanoTime2();
cleanupVisitedGrid();
markPointsAtVisitedGridAndStoreNonZeroIndexes(current, 0, currentLength);
for (int k = 0, m = numberOfDeferredContours(); k < m; k++) {
final int pointsFrom = deferredContourOffset(k);
final int pointsTo = pointsFrom + deferredContourLength(k);
markPointsAtVisitedGridAndStoreNonZeroIndexes(deferredContours.points, pointsFrom, pointsTo);
}
long t2 = nanoTime2();
tRevivingGrid += t2 - t1;
}
}
private void compressClusterContour(final int indexInCluster) {
final int index = indexesOfClusterContours[indexInCluster];
final int minX = allMinX[index] >> gridStepLog;
final int minY = allMinY[index] >> gridStepLog;
final int dimX = (allMaxX[index] >> gridStepLog) - minX + 1;
final int dimY = (allMaxY[index] >> gridStepLog) - minY + 1;
final int from = clusterContoursOffsets[indexInCluster];
final int to = clusterContoursOffsets[indexInCluster + 1];
compressContour(clusterContours, from, to, minX, minY, dimX, dimY);
}
private void compressContour(int[] points, int pointsFrom, int pointsTo, int minX, int minY, int dimX, int dimY) {
final int workSpaceSize = dimX * dimY;
java.util.Arrays.fill(visitedGrid, 0, workSpaceSize, 0L);
// - we use the beginning of visitedGrid as a work space
markPointsAtGrid(points, pointsFrom, pointsTo, minX, minY, dimX, dimY);
retrieveAllCompressedPointsFromGrid(minX, minY, dimX, dimY);
}
// Works with a local starting fragment of visitedGrid in coordinates of a joined contour minX/Y..maxX/Y
private void markPointsAtGrid(int[] points, int pointsFrom, int pointsTo, int minX, int minY, int dimX, int dimY) {
final long[] workGrid = visitedGrid;
int lastXBit = Integer.MAX_VALUE;
int lastYBit = Integer.MAX_VALUE;
final int gridStepLogForBits = gridStepLog - 3;
assert gridStepLogForBits >= 0;
for (int i = pointsFrom; i < pointsTo; i += 2) {
final int xBit = points[i] >> gridStepLogForBits;
final int yBit = points[i + 1] >> gridStepLogForBits;
if (xBit == lastXBit && yBit == lastYBit) {
continue;
}
lastXBit = xBit;
lastYBit = yBit;
final int x = xBit >> 3;
final int y = yBit >> 3;
final int bitInLong = (yBit & 7) << 3 | (xBit & 7);
final int gridX = x - minX;
final int gridY = y - minY;
assert 0 <= gridX && gridX < dimX
: "compressed gridX=" + gridX + " is out of range 0.." + dimX + "-1";
assert 0 <= gridY && gridY < dimY
: "compressed gridY=" + gridY + " is out of range 0.." + dimY + "-1";
final int position = gridY * dimX + gridX;
workGrid[position] |= 1L << bitInLong;
}
}
// Works with main visitedGrid in coordinates of the cluster
private void markPointsAtVisitedGridAndStoreNonZeroIndexes(int[] points, int pointsFrom, int pointsTo) {
final int minX = visitedGridMinX;
final int minY = visitedGridMinY;
final int dimX = visitedGridDimX;
final int dimY = visitedGridDimY;
int lastXBit = Integer.MAX_VALUE;
int lastYBit = Integer.MAX_VALUE;
final int gridStepLogForBits = gridStepLog - 3;
assert gridStepLogForBits >= 0;
for (int i = pointsFrom; i < pointsTo; i += 2) {
final int xBit = points[i] >> gridStepLogForBits;
final int yBit = points[i + 1] >> gridStepLogForBits;
if (xBit == lastXBit && yBit == lastYBit) {
continue;
}
lastXBit = xBit;
lastYBit = yBit;
final int x = xBit >> 3;
final int y = yBit >> 3;
final int bitInLong = (yBit & 7) << 3 | (xBit & 7);
final int gridX = x - minX;
final int gridY = y - minY;
assert 0 <= gridX && gridX < dimX
: "compressed gridX=" + gridX + " is out of range 0.." + dimX + "-1";
assert 0 <= gridY && gridY < dimY
: "compressed gridY=" + gridY + " is out of range 0.." + dimY + "-1";
final int position = gridY * dimX + gridX;
final long previous = visitedGrid[position];
visitedGrid[position] = previous | (1L << bitInLong);
if (previous == 0L) {
indexesOfNonZeroVisitedGridElements[nonZeroVisitedGridElementsCount++] = position;
}
}
}
private void retrieveAllCompressedPointsFromGrid(int minX, int minY, int dimX, int dimY) {
final long[] workGrid = visitedGrid;
final int fullGridXFrom = minX - visitedGridMinX;
final int fullGridXTo = fullGridXFrom + dimX;
assert fullGridXFrom >= 0 && fullGridXTo <= visitedGridDimX
: "x-range " + fullGridXFrom + ".." + fullGridXTo + " is out of range 0.." + visitedGridDimX;
final int fullGridYFrom = minY - visitedGridMinY;
final int fullGridYTo = fullGridYFrom + dimY;
assert fullGridYFrom >= 0 && fullGridYTo <= visitedGridDimY
: " y-range " + fullGridYFrom + ".." + fullGridYTo + " is out of range 0.." + visitedGridDimY;
final int increment = visitedGridDimX - dimX;
int fullGridOffset = fullGridYFrom * visitedGridDimX + fullGridXFrom;
int count = compressedContoursPositionsLength;
for (int fullGridY = fullGridYFrom, offset = 0; fullGridY < fullGridYTo; fullGridY++) {
assert fullGridOffset == fullGridY * visitedGridDimX + fullGridXFrom;
for (int fullGridX = fullGridXFrom; fullGridX < fullGridXTo; fullGridX++, offset++) {
final long bitMap8x8 = workGrid[offset];
if (bitMap8x8 != 0L) {
if (count >= compressedContoursPositions.length) {
ensureCapacityForCompressedClusterAndReallocate((long) count + 1);
}
compressedContoursPositions[count] = fullGridOffset;
compressedContoursBitMaps8x8[count] = bitMap8x8;
count++;
}
fullGridOffset++;
}
fullGridOffset += increment;
}
compressedContoursPositionsLength = count;
}
private boolean isCompressedContourProbablyVisited(final int indexInCluster) {
long t1 = nanoTime3();
assert useGrid;
// - it is better to check this outside
final int from = compressedContoursPositionsOffsets[indexInCluster];
final int to = compressedContoursPositionsOffsets[indexInCluster + 1];
for (int i = from; i < to; i++) {
if ((visitedGrid[compressedContoursPositions[i]] & compressedContoursBitMaps8x8[i]) != 0) {
tJoiningCheckingGridSuccess += nanoTime3() - t1;
return true;
}
}
tJoiningCheckingGridFail += nanoTime3() - t1;
return false;
}
private void addCompressedContourToVisitedGrid(final int indexInCluster) {
if (!useGrid) {
return;
}
final int from = compressedContoursPositionsOffsets[indexInCluster];
final int to = compressedContoursPositionsOffsets[indexInCluster + 1];
for (int i = from; i < to; i++) {
final int position = compressedContoursPositions[i];
assert position >= 0 && position < visitedGridSize :
"position[" + i + "]=" + position + " is out of grid "
+ visitedGridDimX + "x" + visitedGridDimY + "=" + visitedGridSize;
final long bitMap8x8 = compressedContoursBitMaps8x8[i];
assert bitMap8x8 != 0 : "Zero bitmap 8x8 at position " + position;
final long previous = visitedGrid[position];
visitedGrid[position] = bitMap8x8 | previous;
if (previous == 0) {
indexesOfNonZeroVisitedGridElements[nonZeroVisitedGridElementsCount++] = position;
}
}
}
private void joinCluster() {
assert numberOfClusterContours > 1;
reindexedCurrentLabel = reindexedLabels[indexesOfClusterContours[0]];
rectangleFinder.setIndexedRectangles(
allMinX, allMaxX, allMinY, allMaxY,
indexesOfClusterContours, numberOfClusterContours);
// - so, this finder will search only among numberOfClusterContours objects (usually little amount)
long joiningCount = 0;
for (int k = 0; k < numberOfClusterContours; k++) {
final int currentIndex = indexesOfClusterContours[k];
if (alreadyProcessed[currentIndex]) {
continue;
}
// System.out.printf("%d/%d...%n", k, n);
long t1 = nanoTime1();
initializeCurrentContour(k, currentIndex);
removeAllPreviouslyAddedPossibleNeighbours();
long t2 = nanoTime1();
tInitializeNewCurrent += t2 - t1;
addPossibleNeighbours(currentIndex);
long t3 = nanoTime1();
tFindInitialNeighbours += t3 - t2;
readCurrentContour();
long t4 = nanoTime1();
tReadingCurrent += t4 - t3;
do {
t4 = nanoTime1();
boolean atLeastOneSuccessfullyJoined;
do {
joiningCount++;
// if ((joiningCount & 0xFFF) == 0) System.out.printf("\r%d... ", joiningCount);
if (interrupter != null
&& (joiningCount % CHECK_INTERRUPTION_STEP) == 0
&& interrupter.getAsBoolean()) {
throw new InterruptionException("Contours joiner was interrupted while processing contour #"
+ indexesOfClusterContours[0] + "/" + numberOfContours + " after "
+ joiningCount + " joining actions");
}
if (joiningCount % REVIVING_VISITED_GRID_STEP == 0) {
reviveVisitedGridForCurrentContour();
}
atLeastOneSuccessfullyJoined = growByContoursFromCluster();
} while (atLeastOneSuccessfullyJoined && currentNumberOfPoints > 0);
// - no sense to continue, if currentNumberOfPoints = 0: the contour was actually removed
long t5 = nanoTime1();
tAnalysing += t5 - t4;
correctJoinedContoursStatistics();
writeContour(current, currentNumberOfPoints, currentInternal);
long t6 = nanoTime1();
tWritingContours += t6 - t5;
} while (loadCurrentContourFromDeferred());
alreadyProcessed[currentIndex] = true;
}
}
private boolean growByContoursFromCluster() {
final int m = numberOfPossibleNeighbours;
// - note: findIntersected() DOES NOT returns indexes with alreadyProcessed[k]=true
boolean atLeastOneSuccessfullyJoined = false;
final boolean noGrid = !useGrid;
for (int i = 0; i < m; i++) {
final int joinedIndex = possibleNeighboursIndexesInCluster[i];
assert joinedIndex > currentIndex;
if (!alreadyProcessed[joinedIndex] && (noGrid
|| isCompressedContourProbablyVisited(reverseIndexesOfContoursInCluster[joinedIndex]))) {
if (joinContour(joinedIndex)) {
alreadyProcessed[joinedIndex] = true;
atLeastOneSuccessfullyJoined = true;
break;
}
}
}
correctQuickChecksStatistics(m);
return atLeastOneSuccessfullyJoined;
}
private void removeAllPreviouslyAddedPossibleNeighbours() {
for (int k = 0; k < numberOfPossibleNeighbours; k++) {
possibleNeighboursInClusterSet[possibleNeighboursIndexesInCluster[k]] = false;
}
numberOfPossibleNeighbours = 0;
}
private void addPossibleNeighbours(int contourIndex) {
sortedIndexesOfClusterContoursAppender.reset();
rectangleFinder.findIntersecting(
allMinX[contourIndex], allMaxX[contourIndex], allMinY[contourIndex], allMaxY[contourIndex],
sortedIndexesOfClusterContoursAppender);
final int m = sortedIndexesOfClusterContoursAppender.offset();
joiningOrder.sortIndexes(this, sortedIndexesOfClusterContours, m);
for (int k = 0; k < m; k++) {
final int possibleNeighbour = sortedIndexesOfClusterContours[k];
// - index in original contours array
if (possibleNeighbour > currentIndex
// - it is better not to add contours <= currentIndex into lists,
// than to ignore them in growing loop
&& !possibleNeighboursInClusterSet[possibleNeighbour]
&& !alreadyProcessed[possibleNeighbour]) {
possibleNeighboursInClusterSet[possibleNeighbour] = true;
possibleNeighboursIndexesInCluster[numberOfPossibleNeighbours++] = possibleNeighbour;
}
}
}
/*
// Slower old alternative for joinCluster(); not used now
// Here rectanglesIntersectionFinder is an instance of SimpleRectanglesIntersectionFinder,
// stored in SimpleRectanglesIntersectionFinderLegacy.java.txt in extensions (or in GIT history)
private void joinClusterBasedOnGrowingRectangle() {
assert numberOfClusterContours > 1;
reindexedCurrentLabel = reindexedLabels[indexesOfClusterContours[0]];
rectanglesIntersectionFinder.setCheckedIndexes(indexesOfClusterContours, numberOfClusterContours);
// - so, this finder will search only among numberOfClusterContours objects (usually little number)
long joiningCount = 0;
for (int k = 0; k < numberOfClusterContours; k++) {
final int currentIndex = indexesOfClusterContours[k];
if (alreadyProcessed[currentIndex]) {
continue;
}
// System.out.printf("%d/%d...%n", k, n);
long t1 = nanoTime1();
initializeCurrentContour(k, currentIndex);
readCurrentContour();
long t2 = nanoTime1();
tReadingCurrent += t2 - t1;
do {
t2 = nanoTime1();
boolean atLeastOneSuccessfullyJoined;
do {
// long tQuick1 = nanoTime();
joiningCount++;
// if ((joiningCount & 0xFFF) == 0) System.out.printf("\r%d... ", joiningCount);
if (interrupter != null && (joiningCount & 0xFF) == 0 && interrupter.getAsBoolean()) {
throw new InterruptionException("Contours joiner was interrupted while processing contour #"
+ indexesOfClusterContours[0] + "/" + numberOfContours + " after "
+ joiningCount + " joining actions");
}
atLeastOneSuccessfullyJoined = growByContoursFromClusterBasedOnGrowingRectangle();
} while (atLeastOneSuccessfullyJoined && currentNumberOfPoints > 0);
// - no sense to continue, if currentNumberOfPoints = 0: the contour was actually removed
long t3 = nanoTime1();
tAnalysing += t3 - t2;
correctJoinedContoursStatistics();
writeContour(current, currentNumberOfPoints, currentInternal);
long t4 = nanoTime1();
tWritingContours += t4 - t3;
} while (loadCurrentContourFromDeferred());
alreadyProcessed[currentIndex] = true;
}
}
// Slower old alternative for growByContoursFromCluster(); not used now
private boolean growByContoursFromClusterBasedOnGrowingRectangle() {
rectanglesIntersectionFinder.findIntersectedWithCurrent(this);
// - must be recalculated: currentMin/MaxX/Y were recalculated by joinContour()
joiningOrder.sortIndexes(rectanglesIntersectionFinder);
final int[] indexesOfIntersected = rectanglesIntersectionFinder.resultIndexes();
final int m = rectanglesIntersectionFinder.numberOfResultIndexes();
// - note: findIntersected() DOES NOT returns indexes with alreadyProcessed[k]=true
boolean atLeastOneSuccessfullyJoined = false;
// long tQuick2 = nanoTime();
// tQuickCheckRectangles += tQuick2 - tQuick1;
for (int i = 0; i < m; i++) {
final int joinedIndex = indexesOfIntersected[i];
if (joinedIndex > currentIndex) {
if (joinContour(joinedIndex)) {
alreadyProcessed[joinedIndex] = true;
atLeastOneSuccessfullyJoined = true;
break;
}
}
}
correctQuickChecksStatistics(m);
return atLeastOneSuccessfullyJoined;
}
*/
private boolean joinContour(int joinedIndex) {
long t1 = nanoTime2();
initializeNewJoinedAndReallocatePositionsMatrices(joinedIndex);
readNewJoined();
long t2 = nanoTime2();
tJoiningReadingNewJoined += t2 - t1;
boolean canBeJoined = findPositionsOfCurrentContour();
long t3 = nanoTime2();
sNumberOfScanningCurrent++;
if (!canBeJoined) {
tJoiningScanning1Fail += t3 - t2;
return false;
}
tJoiningScanning1Success += t3 - t2;
sNumberOfSuccessfulScanningCurrent++;
canBeJoined = findPositionsOfJoinedContourAndCheckCodirectionalSegmentsWithCurrentContour();
long t4 = nanoTime2();
sNumberOfScanningJoined++;
if (!canBeJoined) {
tJoiningScanning2Fail += t4 - t3;
return false;
}
tJoiningScanning2Success += t4 - t3;
sNumberOfSuccessfulScanningJoined++;
clearUsage();
addInformationAboutJoined();
int iteration = 0;
if (joinCurrentAndJoined(iteration++)) {
exchangeMainAndAdditionalJoinResult();
// - exchanging pointer is faster than alternate solution - saving in deferred results;
// so, we prefer to use deferred results only if there are actual newly created "holes"
while (joinCurrentAndJoined(iteration++)) {
saveJoinResultContourInDeferred();
}
exchangeMainAndAdditionalJoinResult();
}
exchangeCurrentAndJoinResult();
long t5 = nanoTime2();
tJoiningSwitching += t5 - t4;
addPossibleNeighbours(joinedIndex);
addCompressedContourToVisitedGrid(reverseIndexesOfContoursInCluster[joinedIndex]);
long t6 = nanoTime2();
tJoiningAddingToGridAndNeighbours += t6 - t5;
return true;
}
private void exchangeCurrentAndJoinResult() {
final int[] tempArray = current;
current = joinResult;
joinResult = tempArray;
final int tempInt = currentNumberOfPoints;
currentNumberOfPoints = joinResultNumberOfPoints;
currentLength = 2 * currentNumberOfPoints;
joinResultNumberOfPoints = tempInt;
final boolean tempBoolean = currentInternal;
currentInternal = joinResultInternal;
joinResultInternal = tempBoolean;
}
private void exchangeMainAndAdditionalJoinResult() {
final int[] tempArray = joinAdditionalResult;
joinAdditionalResult = joinResult;
joinResult = tempArray;
final int tempInt = joinAdditionalResultNumberOfPoints;
joinAdditionalResultNumberOfPoints = joinResultNumberOfPoints;
joinResultNumberOfPoints = tempInt;
final boolean tempBoolean = joinAdditionalResultInternal;
joinAdditionalResultInternal = joinResultInternal;
joinResultInternal = tempBoolean;
}
private int numberOfDeferredContours() {
return deferredContours.numberOfContours() - deferredContoursStart;
}
private int deferredContourOffset(int indexOfDeferred) {
return deferredContours.getContourOffset(deferredContoursStart + indexOfDeferred);
}
private int deferredContourLength(int indexOfDeferred) {
return deferredContours.getContourLength(deferredContoursStart + indexOfDeferred);
}
private boolean loadCurrentContourFromDeferred() {
final int m = deferredContours.numberOfContours();
assert m >= deferredContoursStart;
assert deferredContoursStart < REPACKING_DEFERRED_QUEUE_STEP;
if (m == deferredContoursStart) {
return false;
}
// Remove the first contour: so, deferred contours works like a queue, not a stack.
// It is little slower, but more logical, because exchangeMainAndAdditionalJoinResult()
// method suppose that the 1st processed contour will be also returned as 1st.
currentInternal = deferredContours.isInternalContour(deferredContoursStart);
final ContourLength contourLength = new ContourLength();
current = deferredContours.getContourPointsAndReallocateResult(current, contourLength, deferredContoursStart);
// - no need to unpack these contours: they are already unpacked!
currentNumberOfPoints = contourLength.getNumberOfPoints();
currentLength = 2 * currentNumberOfPoints;
deferredContoursStart++;
if (deferredContoursStart >= REPACKING_DEFERRED_QUEUE_STEP) {
deferredContours.removeContoursRange(0, deferredContoursStart);
deferredContoursStart = 0;
}
return true;
}
private void saveJoinResultContourInDeferred() {
if (joinResultNumberOfPoints <= 0) {
return;
}
sTotalNumberOfDeferredContours++;
currentHeader.clear();
// label is not important on this stage
currentHeader.setInternalContour(joinResultInternal);
deferredContours.addContour(currentHeader, joinResult, 0, 2 * joinResultNumberOfPoints);
}
private void writeContour(int[] contour, int numberOfPoints, boolean internalContour) {
if (numberOfPoints <= 0) {
return;
}
currentHeader.clear();
currentHeader.setObjectLabel(reindexedCurrentLabel);
currentHeader.setInternalContour(internalContour);
final int nonOptimizedLength = 2 * numberOfPoints;
if (packResultContours) {
final ContourLength contourLength = new ContourLength();
workPackedPoints = Contours.packContourAndReallocateResultUnchecked(
workPackedPoints, contourLength, contour, 0, nonOptimizedLength);
result.addContour(currentHeader, workPackedPoints, 0, contourLength.getArrayLength());
} else {
result.addContour(currentHeader, contour, 0, nonOptimizedLength);
}
}
private void initializeCurrentContour(int indexInCluster, int currentIndex) {
this.currentIndex = currentIndex;
assert hasNeighboursToJoin(currentIndex);
currentMinX = allMinX[currentIndex];
currentMaxX = allMaxX[currentIndex];
currentMinY = allMinY[currentIndex];
currentMaxY = allMaxY[currentIndex];
cleanupVisitedGrid();
addCompressedContourToVisitedGrid(indexInCluster);
}
private void readCurrentContour() {
currentLabel = contours.getObjectLabel(currentIndex);
currentInternal = allInternal[currentIndex];
final int indexInCluster = reverseIndexesOfContoursInCluster[currentIndex];
final int contourOffset = clusterContoursOffsets[indexInCluster];
currentLength = clusterContoursOffsets[indexInCluster + 1] - contourOffset;
currentNumberOfPoints = currentLength >> 1;
ensureCapacityForCurrent(currentLength);
// NOTE: we must reallocate it when necessary, because "current"
// can be exchanged with "joinResult" by exchangeCurrentAndJoinResult()
System.arraycopy(clusterContours, contourOffset, current, 0, currentLength);
currentIndexesOfJoinedContours.clear();
currentIndexesOfJoinedContours.pushInt(currentIndex);
}
private void initializeNewJoinedAndReallocatePositionsMatrices(int joinedIndex) {
this.joinedIndex = joinedIndex;
joinedMinX = allMinX[joinedIndex];
joinedMaxX = allMaxX[joinedIndex];
joinedMinY = allMinY[joinedIndex];
joinedMaxY = allMaxY[joinedIndex];
intersectionMinX = Math.max(currentMinX, joinedMinX);
final int intersectionMaxX = Math.min(currentMaxX, joinedMaxX);
intersectionMinY = Math.max(currentMinY, joinedMinY);
final int intersectionMaxY = Math.min(currentMaxY, joinedMaxY);
if (intersectionMinX > intersectionMaxX || intersectionMinY > intersectionMaxY) {
throw new AssertionError("Containing rectangles of current and joined contours does not "
+ "intersect: " + currentMinX + ".." + currentMaxX + "x" + currentMinY + ".." + currentMaxY
+ " and " + joinedMinX + ".." + joinedMaxX + "x" + joinedMinY + ".." + joinedMaxY
+ "; it must be checked before this moment");
}
intersectionDiffX = intersectionMaxX - intersectionMinX;
intersectionDiffY = intersectionMaxY - intersectionMinY;
intersectionDimX = intersectionDiffX + 1;
intersectionDimY = intersectionDiffY + 1;
final long matrixSize = (long) intersectionDimX * (long) intersectionDimY;
ensureCapacityForPositionsMatrices(matrixSize);
assert intersectionDimX > 0 && intersectionDimY > 0;
// - see checks in the constructor
this.intersectionMatrixSize = (int) matrixSize;
}
private void readNewJoined() {
if (DETAILED_DEBUG_LEVEL >= 1 && reindexedLabels[joinedIndex] != reindexedCurrentLabel) {
throw new AssertionError("Attempt to join contours with different reindexed labels: "
+ "for current contour reindex(" + currentLabel + ")=" + reindexedCurrentLabel
+ ", but for joined contour reindex(" + joinedLabel() + ")=" + reindexedLabels[joinedIndex]);
}
joinedInternal = allInternal[joinedIndex];
final int indexInCluster = reverseIndexesOfContoursInCluster[joinedIndex];
joined = clusterContours;
joinedOffset = clusterContoursOffsets[indexInCluster];
joinedLength = clusterContoursOffsets[indexInCluster + 1] - joinedOffset;
joinedNumberOfPoints = joinedLength >> 1;
}
private int joinedLabel() {
return contours.getObjectLabel(joinedIndex);
}
private boolean joinCurrentAndJoined(int iteration) {
joinResultNumberOfPoints = 0;
// - initialize empty result
final CurrentOrJoinedContour oneFromTwo = new CurrentOrJoinedContour(iteration);
int p = oneFromTwo.initializeSwitchingAlgorithm();
if (p == -1) {
return false;
}
ensureCapacityForJoinResultContour((long) currentLength + (long) joinedLength);
final int maxPossibleResultPosition = currentLength + joinedLength;
final int startPosition = p;
final CurrentOrJoinedSwitcher startSwitcher = oneFromTwo.switcher;
final int[] twoStartPositions = {-1, -1};
twoStartPositions[oneFromTwo.switcher.index] = startPosition;
final int[] twoLastPositions = twoStartPositions.clone();
boolean switchesOccured = false;
int resultPosition = 0;
do {
checkInfiniteLoop(resultPosition, maxPossibleResultPosition);
int x = oneFromTwo.x(p);
int y = oneFromTwo.y(p);
assert !oneFromTwo.used(p) :
"Already used point " + x + "," + y + " appeared; it is impossible while correct scanning";
final int dx = x - intersectionMinX;
final int dy = y - intersectionMinY;
int distance = 0;
if (dx < 0 || dx > intersectionDiffX) {
distance = dx < 0 ? -dx : dx - intersectionDiffX;
final int distanceY = dy < 0 ? -dy : dy - intersectionDiffY;
if (distanceY > 0) {
distance += distanceY;
}
} else if (dy < 0 || dy > intersectionDiffY) {
distance = dy < 0 ? -dy : dy - intersectionDiffY;
}
// - we need at least "distance" steps to appear inside intersectionMinX/Y..joinedMaxX/Y,
// because every step has length 1 (horizontal or vertical)
final boolean skipTrivialSteps = distance > 6;
if (skipTrivialSteps) {
// - try to make large step; no sense to optimize for very little distance
distance--;
// - we need to make last step in a usual manner, to be accurate with REMOVED_POINT
distance <<= 1;
final int limit = oneFromTwo.switcher == startSwitcher && startPosition > p ?
startPosition :
oneFromTwo.length;
if (distance > limit - p) {
distance = limit - p;
}
oneFromTwo.copyTo(p, joinResult, resultPosition, distance);
java.util.Arrays.fill(oneFromTwo.usage, p >> 1, (p + distance) >> 1, true);
resultPosition += distance;
p += distance;
if (p == oneFromTwo.length) {
p = 0;
}
if (DETAILED_DEBUG_LEVEL >= 3) {
oneFromTwo.debugPrintSkipping(p, x, y, distance);
}
} else {
joinResult[resultPosition++] = x;
joinResult[resultPosition++] = y;
oneFromTwo.use(p);
p = oneFromTwo.cyclicNextEven(p);
}
// return positionAtContour(positionAtThis, points, offset, length, switcher.other());
int positionAtOther = oneFromTwo.other.positionAtContour(p, this);
if (DETAILED_DEBUG_LEVEL >= 3) {
oneFromTwo.debugPrintPoint(p);
}
final boolean nonTrivialSituation = positionAtOther != EMPTY_POSITION;
if (nonTrivialSituation) {
if (skipTrivialSteps) {
throw new AssertionError("After skipping trivial steps we must "
+ "not find anything yet (because of distance-- above)");
}
assert (positionAtOther & 0x1) == 0;
final int checkedAtThis = oneFromTwo.switcher.positionAtContour(positionAtOther, this);
if (checkedAtThis != p) {
throw new AssertionError("Mutual positions of current and joined contours "
+ "do not match: current position = " + p + ", mutual = " + checkedAtThis);
}
positionAtOther = oneFromTwo.cyclicNextEvenAtOther(positionAtOther);
// - Because direction of the other segment is opposite, its END coincides with
// the BEGINNING of this segment. Note that we can be sure that it is really opposite:
// codirectional segments are disabled to join (see findPositionsOfJoinedContour()).
x = oneFromTwo.x(p);
y = oneFromTwo.y(p);
if (oneFromTwo.otherX(positionAtOther) != x || oneFromTwo.otherY(positionAtOther) != y) {
throw new AssertionError("Different point at the current and joined contours");
}
final int positionAtThis = oneFromTwo.switcher.positionAtContour(positionAtOther, this);
twoLastPositions[oneFromTwo.switcher.index] = p;
// IMPORTANT! We must do this in BOTH following cases, to provide correct
// last position != -1 in checkReturningBack
if (positionAtThis != EMPTY_POSITION) {
// - Next position at other is also occupied by this contour:
// here we should not switch to it, but just must JUMP to the next position.
p = oneFromTwo.cyclicNextEven(positionAtThis);
// - Because other segment is opposite, its END coincides with the BEGINNING of this segment
if (oneFromTwo.x(p) != x || oneFromTwo.y(p) != y) {
throw new AssertionError("Invalid jump to #" + p + ": " + x + "," + y + " -> "
+ oneFromTwo.x(p) + "," + oneFromTwo.y(p) + " at "
+ oneFromTwo.switcher.name + " contour. " + contoursInfo());
}
if (DETAILED_DEBUG_LEVEL >= 2) {
oneFromTwo.debugPrintJump(p);
}
} else {
oneFromTwo.switchToOther();
p = positionAtOther;
if (DETAILED_DEBUG_LEVEL >= 3) {
oneFromTwo.debugPrintSwitching(p);
}
}
switchesOccured = true;
if (p != startPosition || oneFromTwo.switcher != startSwitcher) {
// Note: we skip this checking in trivial situation (for better performance).
// Here "if" is important: if we are going to finish the loop (returned back to start position),
// we should not check cyclicLess, because, of course, start position is LESS than the last.
oneFromTwo.checkReturningBackAfterSwitchOrJump(p, twoStartPositions, twoLastPositions);
}
}
} while (p != startPosition || oneFromTwo.switcher != startSwitcher);
// - note: the check above is NOT a duplicate of the previous same check
if (!switchesOccured) {
throw new AssertionError("No switches, though we must have counter-directional segments!");
}
joinResultNumberOfPoints = resultPosition >> 1;
return true;
}
private void clearUsage() {
ensureCapacityForUsage();
java.util.Arrays.fill(currentUsage, 0, currentNumberOfPoints, false);
java.util.Arrays.fill(joinedUsage, 0, joinedNumberOfPoints, false);
}
private void checkInfiniteLoop(int resultPosition, int maxPossibleResultPosition) {
if (resultPosition >= maxPossibleResultPosition) {
throw new AssertionError("Infinite loop whilee joining to the contour #"
+ currentIndex + " (0-based numbering, label " + currentLabel
+ ") a new contour #" + joinedIndex + " (label " + joinedLabel()
+ "): " + contoursInfo());
}
}
private void addInformationAboutJoined() {
currentMinX = Math.min(currentMinX, joinedMinX);
currentMaxX = Math.max(currentMaxX, joinedMaxX);
currentMinY = Math.min(currentMinY, joinedMinY);
currentMaxY = Math.max(currentMaxY, joinedMaxY);
currentIndexesOfJoinedContours.pushInt(joinedIndex);
}
private boolean findPositionsOfCurrentContour() {
JArrays.fillIntArray(currentPositionsForXPlusSegments, 0, intersectionMatrixSize, EMPTY_POSITION);
JArrays.fillIntArray(currentPositionsForYPlusSegments, 0, intersectionMatrixSize, EMPTY_POSITION);
final int n = currentLength;
assert n > 0;
final int intersectionMinX = this.intersectionMinX;
final int intersectionMinY = this.intersectionMinY;
final int intersectionDiffX = this.intersectionDiffX;
final int intersectionDiffY = this.intersectionDiffY;
final int intersectionDimX = this.intersectionDimX;
// - JVM works better with local variables, not fields of an object
boolean hasPointsInsideJoinedRectangle = false;
for (int i = 0; i < n; ) {
final int x = current[i] - intersectionMinX;
final int y = current[i + 1] - intersectionMinY;
if (x < 0 || x > intersectionDiffX) {
int distance = x < 0 ? -x : x - intersectionDiffX;
final int distanceY = y < 0 ? -y : y - intersectionDiffY;
if (distanceY > 0) {
distance += distanceY;
}
i += distance << 1;
// - we need at least such number of steps to appear inside intersectionMinX/Y..joinedMaxX/Y,
// because every step has length 1 (horizontal or vertical)
continue;
}
if (y < 0 || y > intersectionDiffY) {
int distance = y < 0 ? -y : y - intersectionDiffY;
i += distance << 1;
// - we need at least such number of steps to appear inside intersectionMinX/Y..joinedMaxX/Y,
// because every step has length 1 (horizontal or vertical)
continue;
}
final int lastI = i == 0 ? n - 2 : i - 2;
final int lastX = current[lastI] - intersectionMinX;
final int lastY = current[lastI + 1] - intersectionMinY;
i += 2;
if (lastX < 0 || lastY < 0 || lastX > intersectionDiffX || lastY > intersectionDiffY) {
continue;
}
hasPointsInsideJoinedRectangle = true;
final int dx = x - lastX;
final int dy = y - lastY;
assert dy == 0 ? dx == -1 || dx == 1 : dx == 0 && (dy == -1 || dy == 1) :
"invalid segment in currently joined contour: " + lastX + "," + lastY + " -> " + x + "," + y
+ "; it was NOT CHECKED yet??";
final int disp = (dy < 0 ? y : lastY) * intersectionDimX + (dx < 0 ? x : lastX);
final int[] currentPositions = dy == 0 ?
currentPositionsForXPlusSegments :
currentPositionsForYPlusSegments;
if (currentPositions[disp] != EMPTY_POSITION) {
// - its possible, because we didn't check ALL segments of the joined contour
throw new IllegalArgumentException("One of the contours [#"
+ Arrays.toString(currentIndexesOfJoinedContours, ", #", 500)
+ "] intersects itself, i.e. twice contains the segment " +
+(intersectionMinX + lastX) + "," + (intersectionMinY + lastY) + " - "
+ (intersectionMinX + x) + "," + (intersectionMinY + y)
+ "; such contours cannot be joined");
}
currentPositions[disp] = lastI;
}
if (DETAILED_DEBUG_LEVEL >= 2) {
System.out.printf("Testing ability to join %d (%d, %d points) to %d (%d, %d points): "
+ "current %s joined rectangle (%s)%n",
joinedIndex, joinedLabel(), joinedNumberOfPoints,
currentIndex, currentLabel, currentNumberOfPoints,
hasPointsInsideJoinedRectangle ? "INTERSECTS" : "DOESN'T intersect",
Arrays.toString(currentIndexesOfJoinedContours, ",", 200));
}
return hasPointsInsideJoinedRectangle;
}
private boolean findPositionsOfJoinedContourAndCheckCodirectionalSegmentsWithCurrentContour() {
JArrays.fillIntArray(joinedPositionsForXPlusSegments, 0, intersectionMatrixSize, EMPTY_POSITION);
JArrays.fillIntArray(joinedPositionsForYPlusSegments, 0, intersectionMatrixSize, EMPTY_POSITION);
boolean hasCommonPointsWithCurrentContour = false;
final int n = joinedLength;
assert n > 0;
final int intersectionMinX = this.intersectionMinX;
final int intersectionMinY = this.intersectionMinY;
final int intersectionDiffX = this.intersectionDiffX;
final int intersectionDiffY = this.intersectionDiffY;
final int intersectionDimX = this.intersectionDimX;
// - JVM works better with local variables, not fields of an object
for (int i = 0; i < n; ) {
final int x = joined[joinedOffset + i] - intersectionMinX;
final int y = joined[joinedOffset + i + 1] - intersectionMinY;
if (x < 0 || x > intersectionDiffX) {
int distance = x < 0 ? -x : x - intersectionDiffX;
final int distanceY = y < 0 ? -y : y - intersectionDiffY;
if (distanceY > 0) {
distance += distanceY;
}
i += distance << 1;
// - we need at least such number of steps to appear inside intersectionMinX/Y..joinedMaxX/Y,
// because every step has length 1 (horizontal or vertical)
continue;
}
if (y < 0 || y > intersectionDiffY) {
int distance = y < 0 ? -y : y - intersectionDiffY;
i += distance << 1;
// - we need at least such number of steps to appear inside intersectionMinX/Y..joinedMaxX/Y,
// because every step has length 1 (horizontal or vertical)
continue;
}
final int lastI = i == 0 ? n - 2 : i - 2;
final int lastX = joined[joinedOffset + lastI] - intersectionMinX;
final int lastY = joined[joinedOffset + lastI + 1] - intersectionMinY;
i += 2;
if (lastX < 0 || lastY < 0 || lastX > intersectionDiffX || lastY > intersectionDiffY) {
continue;
}
final int dx = x - lastX;
final int dy = y - lastY;
assert dy == 0 ? dx == -1 || dx == 1 : dx == 0 && (dy == -1 || dy == 1) :
"invalid segment in unpacked contour: " + lastX + "," + lastY + " -> " + x + "," + y;
final int disp = (dy < 0 ? y : lastY) * intersectionDimX + (dx < 0 ? x : lastX);
final int[] joinedPositions = dy == 0 ?
joinedPositionsForXPlusSegments :
joinedPositionsForYPlusSegments;
if (joinedPositions[disp] != EMPTY_POSITION) {
throw new IllegalArgumentException("The contour #" + joinedIndex
+ " intersects itself, i.e. twice contains the segment " +
+(intersectionMinX + lastX) + "," + (intersectionMinY + lastY) + " - "
+ (intersectionMinX + x) + "," + (intersectionMinY + y)
+ "; such contours cannot be joined");
}
joinedPositions[disp] = lastI;
int q = dy == 0 ? currentPositionsForXPlusSegments[disp] : currentPositionsForYPlusSegments[disp];
if (q != EMPTY_POSITION) {
final int currentX = current[q] - intersectionMinX;
final int currentY = current[q + 1] - intersectionMinY;
if (currentX == lastX && currentY == lastY) {
// If we have CODIRECTIONAL segments, we must reject this contour at all:
// in other case we can lead to current contour, containing some segments TWICE.
if (DETAILED_DEBUG_LEVEL >= 2) {
System.out.printf(" Joining failed%n");
}
return false;
}
assert currentX == x && currentY == y :
"segments in current and joined contours do not match: " + lastX + "," + lastY + " -> "
+ x + "," + y + ", but " + currentX + "," + currentY;
final int nextQ = cyclicNextEven(q, currentLength);
final int currentNextX = current[nextQ] - intersectionMinX;
final int currentNextY = current[nextQ + 1] - intersectionMinY;
assert currentNextX == lastX && currentNextY == lastY :
"segments in current and joined contours do not match: " + lastX + "," + lastY + " -> "
+ x + "," + y + ", but " + currentNextX + "," + currentNextY;
hasCommonPointsWithCurrentContour = true;
}
}
if (DETAILED_DEBUG_LEVEL >= 2) {
System.out.printf("Joining %d (%d, %d points) to %d (%d, %d points): joined %s current rectangle (%s)%n",
joinedIndex, joinedLabel(), joinedNumberOfPoints,
currentIndex, currentLabel, currentNumberOfPoints,
hasCommonPointsWithCurrentContour ? "INTERSECTS" : "DOESN'T intersect",
Arrays.toString(currentIndexesOfJoinedContours, ",", 200));
}
return hasCommonPointsWithCurrentContour;
}
private int positionOfMinX(int[] points, int offset, int numberOfPoints) {
long t1 = nanoTime3();
assert numberOfPoints >= 1;
int offsetOfMinX = offset;
int minX = points[offset];
for (int i = offset + 2, to = offset + 2 * numberOfPoints; i < to; i += 2) {
final int x = points[i];
if (x < minX) {
minX = x;
offsetOfMinX = i;
}
}
long t2 = nanoTime3();
tOffsetOfMinX += t2 - t1;
return offsetOfMinX - offset;
}
// This method finds position q at the OTHER contour, so that its segment q->q+1
// is equal to positionAtCurrent->positionAtCurrent+1 segment in the current "contour"
private int positionAtJoined(int positionAtCurrent) {
final int x = current[positionAtCurrent] - intersectionMinX;
final int y = current[positionAtCurrent + 1] - intersectionMinY;
if (x < 0 || y < 0 || x >= intersectionDimX || y >= intersectionDimY) {
return EMPTY_POSITION;
}
final int nextPosition = cyclicNextEven(positionAtCurrent, currentLength);
final int nextX = current[nextPosition] - intersectionMinX;
final int nextY = current[nextPosition + 1] - intersectionMinY;
if (nextX < 0 || nextY < 0 || nextX >= intersectionDimX || nextY >= intersectionDimY) {
return EMPTY_POSITION;
}
final int dx = nextX - x;
final int dy = nextY - y;
assert dy == 0 ? dx == -1 || dx == 1 : dx == 0 && (dy == -1 || dy == 1) :
"invalid unpacked contour: dx = " + dx + ", dy = " + dy
+ " after the point #" + positionAtCurrent / 2 + "/" + currentLength / 2;
final int disp = (dy < 0 ? nextY : y) * intersectionDimX + (dx < 0 ? nextX : x);
final int q;
q = dy == 0 ? joinedPositionsForXPlusSegments[disp] : joinedPositionsForYPlusSegments[disp];
assert q == EMPTY_POSITION || (q & 1) == 0 :
"odd value " + q + " is impossible in positions matrix";
return q;
}
private int positionAtCurrent(int positionAtJoined) {
final int x = joined[joinedOffset + positionAtJoined] - intersectionMinX;
final int y = joined[joinedOffset + positionAtJoined + 1] - intersectionMinY;
if (x < 0 || y < 0 || x >= intersectionDimX || y >= intersectionDimY) {
return EMPTY_POSITION;
}
final int nextPosition = cyclicNextEven(positionAtJoined, joinedLength);
final int nextX = joined[joinedOffset + nextPosition] - intersectionMinX;
final int nextY = joined[joinedOffset + nextPosition + 1] - intersectionMinY;
if (nextX < 0 || nextY < 0 || nextX >= intersectionDimX || nextY >= intersectionDimY) {
return EMPTY_POSITION;
}
final int dx = nextX - x;
final int dy = nextY - y;
assert dy == 0 ? dx == -1 || dx == 1 : dx == 0 && (dy == -1 || dy == 1) :
"invalid unpacked contour: dx = " + dx + ", dy = " + dy
+ " after the point #" + positionAtJoined / 2 + "/" + joinedLength / 2;
final int disp = (dy < 0 ? nextY : y) * intersectionDimX + (dx < 0 ? nextX : x);
final int q;
q = dy == 0 ? currentPositionsForXPlusSegments[disp] : currentPositionsForYPlusSegments[disp];
assert q == EMPTY_POSITION || (q & 1) == 0 :
"odd value " + q + " is impossible in positions matrix";
return q;
}
private long nanoTime1() {
return measureTimingLevel >= 1 ? System.nanoTime() : 0;
}
private long nanoTime2() {
return measureTimingLevel >= 2 ? System.nanoTime() : 0;
}
private long nanoTime3() {
return measureTimingLevel >= 3 ? System.nanoTime() : 0;
}
private void correctQuickChecksStatistics(int checkedContoursCount) {
sMinCheckedContoursCount = Math.min(sMinCheckedContoursCount, checkedContoursCount);
sMaxCheckedContoursCount = Math.max(sMaxCheckedContoursCount, checkedContoursCount);
sSumCheckedContoursCount += checkedContoursCount;
sNumberOfCheckedContoursLoops++;
}
private void correctJoinedContoursStatistics() {
int m = (int) currentIndexesOfJoinedContours.length();
sMinJoinedContoursCount = Math.min(sMinJoinedContoursCount, m);
sMaxJoinedContoursCount = Math.max(sMaxJoinedContoursCount, m);
sSumJoinedContoursCount += m;
sNumberOfJoinedContours++;
m = numberOfDeferredContours();
sMinDeferredContoursCount = Math.min(sMinDeferredContoursCount, m);
sMaxDeferredContoursCount = Math.max(sMaxDeferredContoursCount, m);
sSumDeferredContoursCount += m;
sNumberOfDeferredContoursChecks++;
}
private String contoursInfo() {
return "(The current contour is now a union of the following: [#" + Arrays.toString(
currentIndexesOfJoinedContours, ", #", 500)
+ "]; its points: " + JArrays.toString(
JArrays.copyOfRange(current, 0, currentLength),
",", 2500) + "; points of joined: "
+ JArrays.toString(
JArrays.copyOfRange(joined, 0, joinedLength),
",", 2500) + ".)";
}
private static int reindex(int objectLabel, int[] joinedLabelsMap, int defaultJoinedLabel) {
if (objectLabel < 0) {
throw new IllegalArgumentException("Objects in contours must be represented by zero "
+ "or negative integers, but we have " + objectLabel);
}
if (joinedLabelsMap == null) {
return defaultJoinedLabel;
}
if (objectLabel >= joinedLabelsMap.length) {
// - correct situation: internal objects, not intersecting frame boundaries,
// are not added into this disjoint set
return objectLabel;
} else {
final int result = joinedLabelsMap[objectLabel];
if (result < 0) {
throw new IllegalArgumentException("Joined labels map must contain only non-negative elements, "
+ "but it contains " + result);
}
return result;
}
}
private void ensureCapacityForUsage() {
if (currentNumberOfPoints > currentUsage.length) {
currentUsage = new boolean[Math.max(16, Math.max(currentNumberOfPoints,
(int) Math.min(Integer.MAX_VALUE, (long) (2.0 * currentUsage.length))))];
}
if (joinedNumberOfPoints > joinedUsage.length) {
joinedUsage = new boolean[Math.max(16, Math.max(joinedNumberOfPoints,
(int) Math.min(Integer.MAX_VALUE, (long) (2.0 * joinedUsage.length))))];
}
}
private void ensureCapacityForUnpackedClusterAndReallocate(long requiredLength) {
if (requiredLength > clusterContours.length) {
if (requiredLength > Integer.MAX_VALUE) {
throw new TooLargeArrayException("Too large contour array: > Integer.MAX_VALUE elements");
}
clusterContours = java.util.Arrays.copyOf(clusterContours, Math.max(16, Math.max((int) requiredLength,
(int) Math.min(Integer.MAX_VALUE, (long) (2.0 * clusterContours.length)))));
}
}
private void ensureCapacityForCompressedClusterAndReallocate(long requiredLength) {
assert compressedContoursBitMaps8x8.length == compressedContoursPositions.length;
if (requiredLength > compressedContoursPositions.length) {
if (requiredLength > Integer.MAX_VALUE) {
throw new TooLargeArrayException("Too large compressed positions array: > Integer.MAX_VALUE elements");
}
final int newLength = Math.max(16, Math.max((int) requiredLength,
(int) Math.min(Integer.MAX_VALUE, (long) (2.0 * compressedContoursPositions.length))));
compressedContoursPositions = java.util.Arrays.copyOf(compressedContoursPositions, newLength);
compressedContoursBitMaps8x8 = java.util.Arrays.copyOf(compressedContoursBitMaps8x8, newLength);
}
}
private void ensureCapacityForCurrent(int requiredLength) {
if (requiredLength > current.length) {
current = new int[Math.max(16, Math.max(requiredLength,
(int) Math.min(Integer.MAX_VALUE, (long) (2.0 * current.length))))];
}
}
private void ensureCapacityForJoinResultContour(long requiredLength) {
if (requiredLength > Integer.MAX_VALUE) {
throw new TooLargeArrayException("Too large possible result of joining contours: 2 * "
+ requiredLength / 2 + " points >= 2^31");
}
if (requiredLength > joinResult.length) {
joinResult = new int[Math.max(16, Math.max((int) requiredLength,
(int) Math.min(Integer.MAX_VALUE, (long) (2.0 * joinResult.length))))];
}
}
private void ensureCapacityForPositionsMatrices(long requiredMatrixSize) {
if (requiredMatrixSize > currentPositionsForXPlusSegments.length) {
// - usually should not occur: we allocated enough memory in the constructor
if (requiredMatrixSize > Integer.MAX_VALUE) {
throw new TooLargeArrayException("Too large intersection area: "
+ intersectionDimX + " x " + intersectionDimY + " >= 2^31 pixels, "
+ "such contours cannot be joined (it occurred while attempt to join contour #"
+ joinedIndex + " with containing rectangle "
+ joinedMinX + ".." + joinedMaxX + " x " + joinedMinY + ".." + joinedMaxY
+ " to current contour, growing from #" + currentIndex
+ " and having now containing rectangle "
+ currentMinX + ".." + currentMaxX + " x " + currentMinY + ".." + currentMaxY + ")");
}
final int newMatrixSize = Math.max(16, Math.max((int) requiredMatrixSize,
(int) Math.min(Integer.MAX_VALUE, (long) (2.0 * currentPositionsForXPlusSegments.length))));
// System.err.println("Enlarged to " + newMatrixSize);
currentPositionsForXPlusSegments = new int[newMatrixSize];
currentPositionsForYPlusSegments = new int[newMatrixSize];
joinedPositionsForXPlusSegments = new int[newMatrixSize];
joinedPositionsForYPlusSegments = new int[newMatrixSize];
}
}
private static int cyclicNextEven(int p, int length) {
p += 2;
return p == length ? 0 : p;
}
private static boolean cyclicLess(int start, int length, int a, int b) {
assert 0 <= a && a < length : "must be 0 <= " + a + " < " + length;
assert 0 <= b && b < length : "must be 0 <= " + b + " < " + length;
assert 0 <= start && start < length : "must be 0 <= " + start + " < " + length;
if (a < start) {
return b < start && a < b;
} else {
return b < start || a < b;
}
}
private class CurrentOrJoinedContour {
private final int iteration;
CurrentOrJoinedSwitcher switcher = null;
CurrentOrJoinedSwitcher other = null;
int[] points = null;
int offset = 0;
int[] otherPoints = null;
int otherOffset = 0;
boolean[] usage = null;
int length;
int otherLength;
private CurrentOrJoinedContour(int iteration) {
assert iteration >= 0;
this.iteration = iteration;
}
void switchTo(CurrentOrJoinedSwitcher switcher) {
this.switcher = switcher;
if (switcher.isJoined()) {
this.other = CurrentOrJoinedSwitcher.CURRENT;
this.points = joined;
this.offset = joinedOffset;
this.otherPoints = current;
this.otherOffset = 0;
this.length = joinedLength;
this.otherLength = currentLength;
this.usage = joinedUsage;
} else {
this.other = CurrentOrJoinedSwitcher.JOINED;
this.points = current;
this.offset = 0;
this.otherPoints = joined;
this.otherOffset = joinedOffset;
this.length = currentLength;
this.otherLength = joinedLength;
this.usage = currentUsage;
}
}
int x(int p) {
return points[offset + p];
}
int y(int p) {
return points[offset + p + 1];
}
int otherX(int p) {
return otherPoints[otherOffset + p];
}
int otherY(int p) {
return otherPoints[otherOffset + p + 1];
}
boolean used(int p) {
return usage[p >> 1];
}
void use(int p) {
usage[p >> 1] = true;
}
void copyTo(int p, int[] result, int resultOffset, int length) {
System.arraycopy(points, offset + p, result, resultOffset, length);
}
void switchToOther() {
switchTo(other);
}
int initializeSwitchingAlgorithm() {
if ((long) currentNumberOfPoints + (long) joinedNumberOfPoints > Contours.MAX_CONTOUR_NUMBER_OF_POINTS) {
throw new TooLargeArrayException("Too large contours: summary number of points in the joining result"
+ " will be > " + Contours.MAX_CONTOUR_NUMBER_OF_POINTS);
}
int p;
if (iteration == 0) {
switchTo(CurrentOrJoinedSwitcher.CURRENT);
p = positionOfMinX(current, 0, currentNumberOfPoints);
final int joinedMinXPosition = positionOfMinX(joined, joinedOffset, joinedNumberOfPoints);
if (otherX(joinedMinXPosition) < x(p)) {
p = joinedMinXPosition;
switchToOther();
}
// - We start from the most left point of 2 contours: we can be sure that it is at
// their external boundary (the following loop skips the possible pores between 2 contours).
// (Here "external" means "the most outside", regardless whether these contours are external or internal.)
p = findSegmentBelongingToOnlyThisOneFromTwo(p);
joinResultInternal = switcher.isJoined() ? joinedInternal : currentInternal;
if (p == -1) {
assert switcher.isCurrent() : "Joined contour cannot be a subset of current, "
+ "because its minX was < minX of the current contour";
// Joined contour contains all points of the current one and (maybe) also some
// additional branches; at the same time, it has no codirectional segments with this one
// if (JOIN_INTERNAL/* && joinedInternal == currentInternal*/) {
switchToOther();
p = findSegmentBelongingToOnlyThisOneFromTwo(0);
}
} else {
switchTo(CurrentOrJoinedSwitcher.JOINED);
// - Start from the joined contour: it should be shorter
p = findUnusedSegmentBelongingToOnlyThisOneFromTwo();
if (p == -1) {
switchToOther();
// - Then investigate the current contour. It is necessary for a case of possible loops
// in the current contour:
// CCCCjjjjj
// CCCCjjjjj
// C...CCC
// C...CCC
// C...CCC
// CCCCCCC
p = findUnusedSegmentBelongingToOnlyThisOneFromTwo();
}
joinResultInternal = !joinedInternal;
// - it is hole between current/joined contours: its direction is reverse
}
if (DETAILED_DEBUG_LEVEL >= 2) {
debugPrintStarting(p);
}
return p;
}
private int findSegmentBelongingToOnlyThisOneFromTwo(int startPosition) {
long t1 = nanoTime3();
int p = startPosition;
int result = -1;
for (int count = 0, n = length; count < n; count += 2) {
if (other.positionAtContour(p, ContourJoiner.this) == EMPTY_POSITION) {
result = p;
break;
}
p += 2;
if (p == n) {
p = 0;
}
}
long t2 = nanoTime3();
tFindFreeSegment += t2 - t1;
return result;
}
private int findUnusedSegmentBelongingToOnlyThisOneFromTwo() {
long t1 = nanoTime3();
int p = 0;
int result = -1;
for (int count = 0, n = length; count < n; count += 2) {
final boolean used = usage[p >> 1];
if (!used && other.positionAtContour(p, ContourJoiner.this) == EMPTY_POSITION) {
result = p;
break;
}
p += 2;
if (p == n) {
p = 0;
}
}
long t2 = nanoTime3();
tFindFreeUnusedSegment += t2 - t1;
return result;
}
private int cyclicNextEven(int p) {
p += 2;
return p == length ? 0 : p;
}
private int cyclicNextEvenAtOther(int p) {
p += 2;
return p == otherLength ? 0 : p;
}
private void checkReturningBackAfterSwitchOrJump(
int p,
int[] twoStartPositions,
int[] twoLastPositions) {
final int oneFromTwoStartPosition = twoStartPositions[switcher.index];
if (oneFromTwoStartPosition == -1) {
twoStartPositions[switcher.index] = p;
} else {
final int lastPosition = twoLastPositions[switcher.index];
if (lastPosition == -1) {
throw new AssertionError("Last position was not initialize yet!");
}
if (cyclicLess(oneFromTwoStartPosition, length, p, lastPosition)) {
throw new AssertionError("Returning back: cannot join "
+ "to the current contour #" + currentIndex + " (0-based numbering, label #"
+ currentLabel + ", " + currentNumberOfPoints
+ " segments) a new joined contour #" + joinedIndex
+ " (label #" + joinedLabel() + ", " + joinedNumberOfPoints
+ " segments), because " + other.name + " contour returned back to "
+ "an earlier point #" + p / 2 + "/" + length / 2
+ " [x=" + points[p] + ",y=" + points[p + 1] + "] at "
+ switcher.name + " contour (it is before the last point at this contour #"
+ lastPosition / 2 + "/" + length / 2
+ " [x=" + points[lastPosition] + ",y=" + points[lastPosition + 1]
+ "], and we started scanning it from point #"
+ oneFromTwoStartPosition / 2 + "/" + length / 2
+ " [x=" + points[oneFromTwoStartPosition] + ",y="
+ points[oneFromTwoStartPosition + 1]
+ "]). It is possible if some of contours are self-intersecting; "
+ "such contours cannot be joined. "
+ contoursInfo());
}
}
}
private void debugPrintStarting(int p) {
System.out.printf("[%d, %d deferred] Starting joining %d (%d, internal=%s, %d points) "
+ "to %d (%d, internal=%s, %d points): #%d in %s%n",
iteration, deferredContours.numberOfContours(),
joinedIndex, joinedLabel(), joinedInternal, joinedNumberOfPoints,
currentIndex, currentLabel, currentInternal, currentNumberOfPoints,
p / 2, switcher);
}
private void debugPrintSkipping(int p, int previousX, int previousY, int distance) {
System.out.printf("[%d] Joining %d (%d, %d points) to %d (%d, %d points): #%d in %s, "
+ "skipping %d: %d,%d -> %d,%d (%s)%n",
iteration, joinedIndex, joinedLabel(), joinedNumberOfPoints,
currentIndex, currentLabel, currentNumberOfPoints,
p / 2, switcher, distance, previousX, previousY,
points[p % length],
points[(p + 1) % length],
Arrays.toString(currentIndexesOfJoinedContours, ",", 200));
}
private void debugPrintPoint(int p) {
System.out.printf("[%d] Joining %d (%d, %d points) to %d (%d, %d points): "
+ "#%d in %s, %d,%d -> %d,%d (%s)%n",
iteration, joinedIndex, joinedLabel(), joinedNumberOfPoints,
currentIndex, currentLabel, currentNumberOfPoints,
p / 2, switcher, points[p], points[p + 1],
points[(p + 2) % length],
points[(p + 3) % length],
Arrays.toString(currentIndexesOfJoinedContours, ",", 200));
}
private void debugPrintJump(int p) {
System.out.printf(" JUMPING in %s: point #%d%n", switcher, p / 2);
}
private void debugPrintSwitching(int p) {
System.out.printf(" SWITCHING to %s: point #%d: %d,%d%n", switcher, p / 2, points[p], points[p + 1]);
}
}
private enum CurrentOrJoinedSwitcher {
CURRENT(0, "current") {
@Override
int positionAtContour(int p, ContourJoiner joiner) {
return joiner.positionAtCurrent(p);
}
@Override
boolean isCurrent() {
return true;
}
@Override
boolean isJoined() {
return false;
}
},
JOINED(1, "joined") {
@Override
int positionAtContour(int p, ContourJoiner joiner) {
return joiner.positionAtJoined(p);
}
@Override
boolean isCurrent() {
return false;
}
@Override
boolean isJoined() {
return true;
}
};
final int index;
final String name;
CurrentOrJoinedSwitcher(int index, String name) {
this.index = index;
this.name = name;
}
abstract boolean isCurrent();
abstract boolean isJoined();
abstract int positionAtContour(int p, ContourJoiner joiner);
}
}
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