macros.ConvertStackToBinary.txt Maven / Gradle / Ivy
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ImageJ is an open source Java image processing program inspired by NIH Image for the Macintosh.
// Converts a stack to binary using locally calculated thresholds
setBatchMode(true);
run("Select None");
run("8-bit");
id = getImageID;
for (i=1; i<=nSlices; i++) {
setSlice(i);
run("Duplicate...", "title=temp");
run("Convert to Mask");
invertingLUT = is("Inverting LUT");
run("Copy");
close;
selectImage(id);
run("Paste");
if (i==1 && invertingLUT != is("Inverting LUT"))
run("Invert LUT");
}
run("Select None");
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