macros.MeasureStack.txt Maven / Gradle / Ivy

Go to download

Show more of this group Show more artifacts with this name
Show all versions of ij Show documentation

ImageJ is an open source Java image processing program inspired by NIH Image for the Macintosh.

There is a newer version: 1.54m

// This macro runs "Measure" on a all the slices in a stack. With a
// hyperstack, it runs "Measure" in a user-selected (c,t,z) order.
// Unchecking "Channels", "Slices" or "Frames" will select the 
// current channel, slice or frame while running "Measure".
//
// Ved P. Sharma, March 21, 2012
// Albert Einstein College of Medicine, New York

    saveSettings;
    setOption("Stack position", true);
    if (!Stack.isHyperstack) {
        getVoxelSize(width, height, depth, unit);
        for (n=1; n<=nSlices; n++) {
          setSlice(n);
          run("Measure");
       }
       if (unit!="pixels") {
           depths = newArray(Table.size);
           for (i=0; i