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ImgLib2 data structures using Unsafe.
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/*
* #%L
* ImgLib2 data structures using Unsafe.
* %%
* Copyright (C) 2017 - 2024 Howard Hughes Medical Institute.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package net.imglib2.img.unsafe;
import net.imglib2.exception.IncompatibleTypeException;
import net.imglib2.img.AbstractImg;
import net.imglib2.img.ImgFactory;
import net.imglib2.img.NativeLongAccessImgFactory;
import net.imglib2.img.array.ArrayImgFactory;
import net.imglib2.img.basictypeaccess.array.ArrayDataAccess;
import net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccessFactory;
import net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe;
import net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe;
import net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe;
import net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe;
import net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe;
import net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe;
import net.imglib2.img.basictypelongaccess.unsafe.owning.OwningBooleanUnsafe;
import net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe;
import net.imglib2.type.NativeLongAccessType;
import net.imglib2.type.NativeLongAccessTypeFactory;
import net.imglib2.type.NativeType;
import net.imglib2.util.Fraction;
/**
*
*
*
* @author Stephan Preibisch
* @author Stephan Saalfeld
*/
public class UnsafeImgFactory< T extends NativeLongAccessType< T > > extends NativeLongAccessImgFactory< T >
{
public UnsafeImgFactory( final T t )
{
super( t );
}
@Deprecated
public UnsafeImgFactory()
{
this( null );
}
@Override
public UnsafeImg< T, ? > create( final long[] dim, final T type )
{
return ( UnsafeImg< T, ? > ) type.createSuitableNativeImg( this, dim );
}
public static long numEntities( final long[] dimensions, final Fraction entitiesPerPixel )
{
final long numEntities = entitiesPerPixel.mulCeil( AbstractImg.numElements( dimensions ) );
return numEntities;
}
@Override
public UnsafeImg< T, OwningBooleanUnsafe > createNativeBooleanInstance( final long[] dimensions, final Fraction entitiesPerPixel )
{
final long numEntities = numEntities( dimensions, entitiesPerPixel );
return new UnsafeImg<>( new OwningBooleanUnsafe( numEntities ), dimensions, entitiesPerPixel );
}
@Override
public UnsafeImg< T, OwningByteUnsafe > createByteInstance( final long[] dimensions, final Fraction entitiesPerPixel )
{
final long numEntities = numEntities( dimensions, entitiesPerPixel );
return new UnsafeImg<>( new OwningByteUnsafe( numEntities ), dimensions, entitiesPerPixel );
}
@Override
public UnsafeImg< T, OwningCharUnsafe > createCharInstance( final long[] dimensions, final Fraction entitiesPerPixel )
{
final long numEntities = numEntities( dimensions, entitiesPerPixel );
return new UnsafeImg<>( new OwningCharUnsafe( numEntities ), dimensions, entitiesPerPixel );
}
@Override
public UnsafeImg< T, OwningDoubleUnsafe > createDoubleInstance( final long[] dimensions, final Fraction entitiesPerPixel )
{
final long numEntities = numEntities( dimensions, entitiesPerPixel );
return new UnsafeImg<>( new OwningDoubleUnsafe( numEntities ), dimensions, entitiesPerPixel );
}
@Override
public UnsafeImg< T, OwningFloatUnsafe > createFloatInstance( final long[] dimensions, final Fraction entitiesPerPixel )
{
final long numEntities = numEntities( dimensions, entitiesPerPixel );
return new UnsafeImg<>( new OwningFloatUnsafe( numEntities ), dimensions, entitiesPerPixel );
}
@Override
public UnsafeImg< T, OwningIntUnsafe > createIntInstance( final long[] dimensions, final Fraction entitiesPerPixel )
{
final long numEntities = numEntities( dimensions, entitiesPerPixel );
return new UnsafeImg<>( new OwningIntUnsafe( numEntities ), dimensions, entitiesPerPixel );
}
@Override
public UnsafeImg< T, OwningLongUnsafe > createLongInstance( final long[] dimensions, final Fraction entitiesPerPixel )
{
final long numEntities = numEntities( dimensions, entitiesPerPixel );
return new UnsafeImg<>( new OwningLongUnsafe( numEntities ), dimensions, entitiesPerPixel );
}
@Override
public UnsafeImg< T, OwningShortUnsafe > createShortInstance( final long[] dimensions, final Fraction entitiesPerPixel )
{
final long numEntities = numEntities( dimensions, entitiesPerPixel );
return new UnsafeImg<>( new OwningShortUnsafe( numEntities ), dimensions, entitiesPerPixel );
}
@SuppressWarnings( { "unchecked", "rawtypes" } )
@Override
public < S > ImgFactory< S > imgFactory( final S type ) throws IncompatibleTypeException
{
if ( NativeType.class.isInstance( type ) ) { return new UnsafeImgFactory(); }
throw new IncompatibleTypeException( this, type.getClass().getCanonicalName() + " does not implement NativeType." );
}
@Override
public UnsafeImg< T, ? > create( final long... dimensions )
{
@SuppressWarnings( { "unchecked", "rawtypes" } )
final UnsafeImg< T, ? > img = create( dimensions, type(), ( NativeLongAccessTypeFactory ) type().getNativeLongAccessTypeFactory() );
return img;
}
private < A extends ArrayDataAccess< A > > UnsafeImg< T, A > create(
final long[] dimensions,
final T type,
final NativeLongAccessTypeFactory< T, A > typeFactory )
{
final Fraction entitiesPerPixel = type.getEntitiesPerPixel();
final int numEntities = ArrayImgFactory.numEntitiesRangeCheck( dimensions, entitiesPerPixel );
final A data = UnsafeAccessFactory.get( typeFactory ).createArray( numEntities );
final UnsafeImg< T, A > img = new UnsafeImg<>( data, dimensions, entitiesPerPixel );
img.setLinkedType( typeFactory.createLinkedType( img ) );
return img;
}
}