Download phg JAR 1.10 with all dependencies
PHG - Practical Haplotype Graph
Files of the artifact phg version 1.10 from the group net.maizegenetics.
Artifact phg
Group net.maizegenetics
Version 1.10
Last update 20. August 2024
Tags: practical haplotype graph
Organization not specified
URL https://bitbucket.org/bucklerlab/practicalhaplotypegraph/wiki/Home
License GNU Lesser General Public License, version 2.1
Dependencies amount 32
Dependencies log4j-core, guava, commons-math3, commons-codec, jfreechart, jfreesvg, ejml-ddense, trove4j, snappy-java, mail, json-simple, javax.json, sqlite-jdbc, htsjdk, ahocorasick, postgresql, colt, gs-core, tassel, kotlin-stdlib-jdk8, kotlin-script-runtime, fastutil, kotlinx-coroutines-core, biojava-core, biojava-genome, sshj, commons-io, jackson-module-kotlin, dataframe, protobuf-kotlin, protobuf-java, error_prone_annotations,
There are maybe transitive dependencies!
Group net.maizegenetics
Version 1.10
Last update 20. August 2024
Tags: practical haplotype graph
Organization not specified
URL https://bitbucket.org/bucklerlab/practicalhaplotypegraph/wiki/Home
License GNU Lesser General Public License, version 2.1
Dependencies amount 32
Dependencies log4j-core, guava, commons-math3, commons-codec, jfreechart, jfreesvg, ejml-ddense, trove4j, snappy-java, mail, json-simple, javax.json, sqlite-jdbc, htsjdk, ahocorasick, postgresql, colt, gs-core, tassel, kotlin-stdlib-jdk8, kotlin-script-runtime, fastutil, kotlinx-coroutines-core, biojava-core, biojava-genome, sshj, commons-io, jackson-module-kotlin, dataframe, protobuf-kotlin, protobuf-java, error_prone_annotations,
There are maybe transitive dependencies!
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Source code of phg version 1.10
META-INF
net.maizegenetics.pangenome
net.maizegenetics.pangenome.Utils
net.maizegenetics.pangenome.api
net.maizegenetics.pangenome.db_loading
net.maizegenetics.pangenome.db_loading.net.maizegenetics.pangenome.db_loading.AddRefRangeGroupPlugin
net.maizegenetics.pangenome.fastaExtraction
net.maizegenetics.pangenome.fastaExtraction.net.maizegenetics.pangenome.fastaExtraction.GVCFSequence
net.maizegenetics.pangenome.gui
net.maizegenetics.pangenome.gvcfFiltering
net.maizegenetics.pangenome.gvcfFiltering.net.maizegenetics.pangenome.gvcfFiltering.FilterGVCFPlugin
net.maizegenetics.pangenome.hapCalling
net.maizegenetics.pangenome.hapCalling.net.maizegenetics.pangenome.hapCalling.FastqToKmerCountPlugin
net.maizegenetics.pangenome.hapCalling.net.maizegenetics.pangenome.hapCalling.HapCountBestPathPlugin
net.maizegenetics.pangenome.hapcollapse
net.maizegenetics.pangenome.io
net.maizegenetics.pangenome.multiSequenceAlignment
net.maizegenetics.pangenome.pipelineTests
net.maizegenetics.pangenome.processAssemblyGenomes
net.maizegenetics.pangenome.smallseq
net.maizegenetics.pangenome.trimAnchors
phg
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