Download tassel JAR 5.2.56 with all dependencies

Files of the artifact tassel version 5.2.56 from the group net.maizegenetics.

Artifact tassel
Group net.maizegenetics
Version 5.2.56

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Source code of tassel version 5.2.56

META-INF

META-INF.META-INF.MANIFEST.MF

net.maizegenetics.analysis

net.maizegenetics.analysis.net.maizegenetics.analysis.ListPlugins

net.maizegenetics.analysis.association

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.AbstractFixedEffectLM

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.AlleleProbabilityFELM

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.AssociationConstants

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.AssociationUtils

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.CompressedDoubleMatrix

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.CompressedMLMusingDoubleMatrix

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.DiscreteSitesFELM

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.EqtlAssociationPlugin

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.FastMultithreadedAssociationPlugin

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.FixedEffectLM

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.FixedEffectLMPlugin

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.GenomicSelectionPlugin

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.MLMPlugin

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.PhenotypeLM

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.ReferenceProbabilityFELM

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.RegRidgeEmmaDoubleMatrix

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.RidgeRegressionEmmaPlugin

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.WeightedMLMPlugin

net.maizegenetics.analysis.association.net.maizegenetics.analysis.association.package-info

net.maizegenetics.analysis.avro

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.AvroConstants

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.ExportAvro

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.GenericArrayPositions

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.GenericArrayTaxa

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.GenericMapAnnotations

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.GenericRecordChromosome

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.GenericRecordGenotype

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.GenericRecordGenotypeTable

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.GenericRecordPosition

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.GenericRecordTaxon

net.maizegenetics.analysis.avro.net.maizegenetics.analysis.avro.ImportAvro

net.maizegenetics.analysis.b4r

net.maizegenetics.analysis.b4r.net.maizegenetics.analysis.b4r.B4RPhenotypeUtils

net.maizegenetics.analysis.b4r.net.maizegenetics.analysis.b4r.GetPhenotypeFromB4RPlugin

net.maizegenetics.analysis.chart

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.AbstractDisplayPlugin

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.BarChart.gif

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.BarChartPanel

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.BasicChartPanel

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.BasicGraphFrame

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.ChartDisplayPlugin

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.HistogramPanel

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.ManhattanDisplayPlugin

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.ManhattanNumberFormat

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.PieChartPanel

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.QQDisplayPlugin

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.TableDisplayPlugin

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.TableReportBoxWhiskerCatDataset

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.TableReportManhattanDataset

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.TableReportPieDataset

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.TableReportQQDataset

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.TableReportStatCategoryDataset

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.TableReportXYDataset

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.XYAndLineToolTipGenerator

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.XYMultipleYToolTipGenerator

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.XYScatterAndLinePanel

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.XYScatterMultipleYPanel

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.XYScatterPanel

net.maizegenetics.analysis.chart.net.maizegenetics.analysis.chart.package-info

net.maizegenetics.analysis.clustering

net.maizegenetics.analysis.clustering.net.maizegenetics.analysis.clustering.Haplotype

net.maizegenetics.analysis.clustering.net.maizegenetics.analysis.clustering.HaplotypeCluster

net.maizegenetics.analysis.clustering.net.maizegenetics.analysis.clustering.HaplotypeClusterer

net.maizegenetics.analysis.clustering.net.maizegenetics.analysis.clustering.package-info

net.maizegenetics.analysis.data

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.AddReferenceAlleleToHDF5Plugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.AddReferenceToGenotypePlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.AdjustPhasingPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.BuildUnfinishedHDF5GenotypesPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.CombineDataSetsPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.ConvertAlignmentCoordinatesPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.CreateHybridGenotypesPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.ExportMultiplePlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.ExportPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.ExtractHapmapSubsetPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.FeatureListToPositionsPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.FileLoadPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.FindInversionsPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.GenomeAnnosDBQueryToPositionListPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.GenosToABHPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.GenotypeSummaryPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.GenotypeToAdditiveValuesPlugin.kt

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.GetPositionListPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.GetTaxaListPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.HDF5SummaryPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.HetsToUnknownPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.IdentityRecognitionPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.IndelsToUnknownPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.IntersectionAlignmentPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.KmerCountingPlugin.kt

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.LIXPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.LowLevelCopyOfHDF5

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.MaskGenotypePlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.MemoryUsagePlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.MergeAlignmentsSameSitesPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.MergeGenotypeTablesPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.MergeGenotypeTablesPluginV2

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.MergeHDF5GenotypesSameSitesPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.MergeRenameDeleteTaxaPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.MigrateHDF5FromT4T5

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.PassThroughPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.PlinkLoadPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.PrincipalComponentsPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.ProjectPcsAndRunModelSelectionPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.ProjectionLoadPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.SeparatePlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.SetLowDepthGenosToMissingPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.SortGenotypeFilePlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.SortTaxaAlphabeticallyPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.SplitHDF5ByChromosomePlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.SubtractGenotypesPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.SynonymizerPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.ThinSitesByPositionPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.UnionAlignmentPlugin

net.maizegenetics.analysis.data.net.maizegenetics.analysis.data.package-info

net.maizegenetics.analysis.distance

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.AMatrixPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.AddDistanceMatrixPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.DistanceMatrixPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.DistanceMatrixRangesPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.DominanceNormalizedIBSMatrix

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.DominanceRelationshipMatrix

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.EndelmanDistanceMatrix

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.GCTADistanceMatrix

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.HMatrixPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.IBSDistanceMatrix

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.IBSDistanceMatrix2Alleles

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.IBSDistanceMatrix3Alleles

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.IBSDistanceMatrixOneByAll

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.Kinship

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.KinshipPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.MultiDimensionalScalingPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.RemoveNaNFromDistanceMatrixPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.SubtractDistanceMatrixPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.VCAPScanPlugin

net.maizegenetics.analysis.distance.net.maizegenetics.analysis.distance.package-info

net.maizegenetics.analysis.filter

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterAlignmentPlugin

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterBySites

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterByTaxa

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterDataSetPlugin

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterSiteBuilderPlugin

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterSiteNamePlugin

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterSubsetPlugin

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterTaxaBuilderPlugin

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterTaxaPropertiesPlugin

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterTraitsDialog

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.FilterTraitsPlugin

net.maizegenetics.analysis.filter.net.maizegenetics.analysis.filter.package-info

net.maizegenetics.analysis.gbs

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.AnnotateTOPM

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.AnnotateTOPMwSAMPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.Barcode

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.BinaryToTextPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.Clusters

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.CompareGenosBetweenHapMapFilesPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.ContigPETagCountPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.DiscoverySNPCallerPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.FastqToPETagCountPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.FastqToTBTPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.FastqToTagCountPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.KeepSpecifiedReadsinFastqPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.KeepSpecifiedSitesInTOPMPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.KmerToTBTPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.KmerToTagCountPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.MergeDuplicateSNPsPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.MergeMultipleTOPMPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.MergeMultipleTagCountPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.MergePETagCountPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.MergeTagsByTaxaFilesByRowPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.MergeTagsByTaxaFilesPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.ModifyTBTHDF5Plugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.PEParseBarcodeRead

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.PEReadBarcodeResult

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.ParseBarcodeRead

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.PolymorphismFinder

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.ProductionPipeline

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.ProductionPipelineMain

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.ProductionSNPCallerPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.QseqToPETagCountPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.QseqToTBTPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.QseqToTagCountPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.ReadBarcodeResult

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.SAMConverterPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.SAMWGMapConverterPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.SNPLogging

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.SeqToTBTHDF5Plugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.ShortReadBarcodeResult

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.SimpleGenotypeSBit

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.SmithWaterman

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.TOPMSummaryPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.TagAgainstAnchor

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.TagAgainstAnchorHypothesis

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.TagAgainstAnchorPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.TagBlockPosition

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.TagCountToFastqPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.TagMatchFinder

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.TerryPipelines

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.TextToBinaryPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.UNetworkFilter

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.UTagCountToTagPairPlugin

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.UTagPairFinder

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.UTagPairToTOPMPlugin

net.maizegenetics.analysis.gbs.neobio

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.AlignmentBlock

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.BasicScoringScheme

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.CharSequence

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.CrochemoreLandauZivUkelson

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.CrochemoreLandauZivUkelsonGlobalAlignment

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.CrochemoreLandauZivUkelsonLocalAlignment

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.Factor

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.FactorSequence

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.IncompatibleScoringSchemeException

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.InvalidScoringMatrixException

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.InvalidSequenceException

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.LocalAlignmentBlock

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.Matrix

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.NeedlemanWunsch

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.OutMatrix

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.PairwiseAlignment

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.PairwiseAlignmentAlgorithm

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.ScoringMatrix

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.ScoringScheme

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.Smawk

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.SmithWaterman

net.maizegenetics.analysis.gbs.neobio.net.maizegenetics.analysis.gbs.neobio.Trie

net.maizegenetics.analysis.gbs

net.maizegenetics.analysis.gbs.net.maizegenetics.analysis.gbs.package-info

net.maizegenetics.analysis.gbs.pana

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanAAddPosToTagMapPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanABuildPivotTBTPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanABuildTagBlockPosPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanABuildTagGWASMapPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanABuildTrainingSetPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanAFilteringTagMapPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanAH5ToAnchorPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanAMergeMappingResultPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanAModelTrainingPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanAPredictionPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanAReadDigestPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanAReadToKmerPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanASamToMultiPositionTOPMPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanASplitTBTPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanASplitTagBlockPosPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanATagGWASMappingPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanATagMapToFastaPlugin

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.PanAUsageExample

net.maizegenetics.analysis.gbs.pana.net.maizegenetics.analysis.gbs.pana.package-info

net.maizegenetics.analysis.gbs.repgen

net.maizegenetics.analysis.gbs.repgen.net.maizegenetics.analysis.gbs.repgen.AlignmentInfo

net.maizegenetics.analysis.gbs.repgen.net.maizegenetics.analysis.gbs.repgen.RGBSProductionSNPCallerPlugin

net.maizegenetics.analysis.gbs.repgen.net.maizegenetics.analysis.gbs.repgen.RampSeqAlignFromBlastTags

net.maizegenetics.analysis.gbs.repgen.net.maizegenetics.analysis.gbs.repgen.RefTagData

net.maizegenetics.analysis.gbs.repgen.net.maizegenetics.analysis.gbs.repgen.RepGenAlignerPlugin

net.maizegenetics.analysis.gbs.repgen.net.maizegenetics.analysis.gbs.repgen.RepGenLDAnalysisPlugin

net.maizegenetics.analysis.gbs.repgen.net.maizegenetics.analysis.gbs.repgen.RepGenLoadSeqToDBPlugin

net.maizegenetics.analysis.gbs.repgen.net.maizegenetics.analysis.gbs.repgen.RepGenPhase2AlignerPlugin

net.maizegenetics.analysis.gbs.repgen.net.maizegenetics.analysis.gbs.repgen.TagCorrelationInfo

net.maizegenetics.analysis.gbs.v2

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.BarcodeTrie

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.DiscoverySNPCallerPluginV2

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.GBSEnzyme

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.GBSSeqToTagDBPlugin

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.GBSUtils

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.GetTagSequenceFromDBPlugin

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.GetTagTaxaDistFromDBPlugin

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.ProductionSNPCallerPluginV2

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.SAMToGBSdbPlugin

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.SNPCutPosTagVerificationPlugin

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.SNPQualityProfilerPlugin

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.TagExportToFastqPlugin

net.maizegenetics.analysis.gbs.v2.net.maizegenetics.analysis.gbs.v2.UpdateSNPPositionQualityPlugin

net.maizegenetics.analysis.gobii

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.BMSConnection

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.GOBIIDbUtils

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.GOBIIPlugin

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.GOBIIPostgresConnection

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.GOBII_IFLUtils

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.GWAS_IFLPlugin

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.HapBreakpoints_IFLFilePlugin

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.MarkerDNARun_IFLFilePlugin

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.MonetDB_IFLFilePlugin

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.PreProcessGOBIIMappingFilePlugin

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.SplitFile_IFLFilePlugin

net.maizegenetics.analysis.gobii.net.maizegenetics.analysis.gobii.UpdateMarkerAndDNA_idxes

net.maizegenetics.analysis.images

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.2DPlot.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.DistanceMatrix.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Diversity.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Export16.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Filter.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.FilterNew.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Filter_horizontal.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.GenePlot.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Genotype.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.ImputeSNP.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.IntersectJoin.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Kin.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.LDPlot.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.LinearAssociation.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.LoadFile.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.LogisticAssociation.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.ManhattanPlot.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Merge.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Mix.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.NumericalGenotype.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.QQPlot.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.STConvert.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Separate.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Synonymizer.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Table.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Tassel_Logo.png

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Tassel_Logo16.png

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Transform.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Tree.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.UnionJoin.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.VCAP.png

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.Workflow.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.amatrix.png

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.hmatrix.png

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.homozygous.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.hybrid.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.info.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.inversion.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.lists.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.log.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.lowDepthToMissing.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.mask.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.package-info

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.pca.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.preferences.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.properties.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.resample.png

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.sort.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.speed.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.summary.gif

net.maizegenetics.analysis.images.net.maizegenetics.analysis.images.trash.gif

net.maizegenetics.analysis.imputation

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.AGPMap

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.BackwardForwardAlgorithm

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.BackwardForwardVariableStateNumber

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.BiparentalHaplotypeFinder

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.CallParentAllelesPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ClusterGenotypesPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.CrossProgenyEmissionMatrix

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.EmissionProbability

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.FILLINDonorGenotypeUtils

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.FILLINFindHaplotypesPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.FILLINImputationAccuracy

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.FILLINImputationPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.FILLINImputationUtils

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.FSFHapImputationPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.FindMergeHaplotypesPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ImputationAccuracyPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ImputationUtils

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ImputeCrossProgeny

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ImputeProgenyStatesPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ImputedTaxon

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.LDKNNiImputationHetV2Plugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.LDKNNiImputationHetV3Plugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.LDKNNiImputationPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.MergeBreakpointFilesPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.NucleotideImputationUtils

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ParentPhasingPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.PhaseHighCoverage

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.PopulationData

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.RandomGenotypeImputationPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ReImputeUpdatedTaxaByFILLINPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.RemoveIndelsForBeaglePlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.RephaseParents

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.SelfedHaplotypeFinder

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.SubpopulationFinder

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.TransitionProbability

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.TransitionProbabilityWithVariableRecombination

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.UseParentHaplotypes

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ViterbiAlgorithm

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ViterbiAlgorithmPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.ViterbiAlgorithmVariableStateNumber

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.WritePopulationAlignmentPlugin

net.maizegenetics.analysis.imputation.net.maizegenetics.analysis.imputation.package-info

net.maizegenetics.analysis.modelfitter

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.AbstractAdditiveSite

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.AbstractForwardRegression

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.AddDomPermutationTestSpliterator

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.AddPlusDomModelEffect

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.AdditiveModelForwardRegression

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.AdditiveResidualForwardRegression

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.AdditiveSite

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.AdditiveSiteStorePlugin

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.CovariatePermutationTestSpliterator

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.ForwardRegression

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.ForwardStepAddDomSpliterator

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.ForwardStepAdditiveSpliterator

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.ForwardStepNestedAdditiveSpliterator

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.ForwardStepSubsettingAdditiveSpliterator

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.ForwardStepSubsettingNestedAdditiveSpliterator

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.GenotypeAdditiveSite

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.NestedCovariatePermutationTestSpliterator

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.RefProbAdditiveSite

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.ResamplingGWASPlugin

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.SNP

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.StepwiseAddDomModelFitter

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.StepwiseAdditiveModelFitter

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.StepwiseAdditiveModelFitterPlugin

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.StepwiseOLSModelFitter

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.StepwiseOLSModelFitterPlugin

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.package-info

net.maizegenetics.analysis.modelfitter.net.maizegenetics.analysis.modelfitter.stepwise.gif

net.maizegenetics.analysis.monetdb

net.maizegenetics.analysis.monetdb.net.maizegenetics.analysis.monetdb.ColumnsToBinaryFullGenomeTablePlugin

net.maizegenetics.analysis.monetdb.net.maizegenetics.analysis.monetdb.ColumnsToBinarySNPOnlyTablePlugin

net.maizegenetics.analysis.monetdb.net.maizegenetics.analysis.monetdb.ColumnsToBinaryUtils

net.maizegenetics.analysis.monetdb.net.maizegenetics.analysis.monetdb.LittleEndianDataOutputStream

net.maizegenetics.analysis.numericaltransform

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.AvgPhenotype

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.AvgPhenotypeByTaxaPlugin

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.BoxCoxTransformation

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.BoxCoxTransformationPlugin

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.ImputationByMean

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.ImputationPlugin

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.NumericalGenotypePlugin

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.SubtractPhenotype

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.SubtractPhenotypeByTaxaPlugin

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.TransformDataDialog

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.TransformDataPlugin

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.kNearestNeighbors

net.maizegenetics.analysis.numericaltransform.net.maizegenetics.analysis.numericaltransform.package-info

net.maizegenetics.analysis

net.maizegenetics.analysis.net.maizegenetics.analysis.package-info

net.maizegenetics.analysis.phg

net.maizegenetics.analysis.phg.net.maizegenetics.analysis.phg.ParseGVCF

net.maizegenetics.analysis.popgen

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.DiversityAnalyses

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.DonorHypoth

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.LDResult

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.LinkageDiseqDisplayPlugin

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.LinkageDisequilibrium

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.LinkageDisequilibriumComponent

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.LinkageDisequilibriumMinimapComponent

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.LinkageDisequilibriumPlugin

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.PolymorphismDistribution

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.SequenceDiversityPlugin

net.maizegenetics.analysis.popgen.net.maizegenetics.analysis.popgen.package-info

net.maizegenetics.analysis.rna

net.maizegenetics.analysis.rna.net.maizegenetics.analysis.rna.FindMatchByWordHash

net.maizegenetics.analysis.rna.net.maizegenetics.analysis.rna.LoadRNAContigsToGBSDBPlugin

net.maizegenetics.analysis.rna.net.maizegenetics.analysis.rna.RNADeMultiPlexSeqToDBPlugin

net.maizegenetics.analysis.rna.net.maizegenetics.analysis.rna.RNADeMultiplexProductionPlugin

net.maizegenetics.analysis.tree

net.maizegenetics.analysis.tree.net.maizegenetics.analysis.tree.ArchaeopteryxPlugin

net.maizegenetics.analysis.tree.net.maizegenetics.analysis.tree.CreateTreePlugin

net.maizegenetics.analysis.tree.net.maizegenetics.analysis.tree.package-info

net.maizegenetics.analysis.workflow

net.maizegenetics.analysis.workflow.net.maizegenetics.analysis.workflow.GLM_(PCA).xml

net.maizegenetics.analysis.workflow.net.maizegenetics.analysis.workflow.GLM_(Q).xml

net.maizegenetics.analysis.workflow.net.maizegenetics.analysis.workflow.MLM_(PCA+K).xml

net.maizegenetics.analysis.workflow.net.maizegenetics.analysis.workflow.MLM_(Q+K).xml

net.maizegenetics.analysis.workflow.net.maizegenetics.analysis.workflow.Taxa_Quality_Control.xml

net.maizegenetics.analysis.workflow.net.maizegenetics.analysis.workflow.WorkflowPlugin

net.maizegenetics.dna

net.maizegenetics.dna.net.maizegenetics.dna.BaseEncoder

net.maizegenetics.dna.net.maizegenetics.dna.WHICH_ALLELE

net.maizegenetics.dna.map

net.maizegenetics.dna.map.net.maizegenetics.dna.map.AbstractPETagsOnPhysicalMap

net.maizegenetics.dna.map.net.maizegenetics.dna.map.AbstractTagsOnPhysicalMap

net.maizegenetics.dna.map.net.maizegenetics.dna.map.Chromosome

net.maizegenetics.dna.map.net.maizegenetics.dna.map.DonorHaplotypes

net.maizegenetics.dna.map.net.maizegenetics.dna.map.GVCFGenomeSequence

net.maizegenetics.dna.map.net.maizegenetics.dna.map.GVCFGenomeSequenceBuilder

net.maizegenetics.dna.map.net.maizegenetics.dna.map.GeneralPosition

net.maizegenetics.dna.map.net.maizegenetics.dna.map.GenomeFeature

net.maizegenetics.dna.map.net.maizegenetics.dna.map.GenomeFeatureBuilder

net.maizegenetics.dna.map.net.maizegenetics.dna.map.GenomeFeatureMap

net.maizegenetics.dna.map.net.maizegenetics.dna.map.GenomeFeatureMapBuilder

net.maizegenetics.dna.map.net.maizegenetics.dna.map.GenomeSequence

net.maizegenetics.dna.map.net.maizegenetics.dna.map.GenomeSequenceBuilder

net.maizegenetics.dna.map.net.maizegenetics.dna.map.PETagsOnPhysicalMap

net.maizegenetics.dna.map.net.maizegenetics.dna.map.PETagsOnPhysicalMapV3

net.maizegenetics.dna.map.net.maizegenetics.dna.map.Position

net.maizegenetics.dna.map.net.maizegenetics.dna.map.PositionArrayList

net.maizegenetics.dna.map.net.maizegenetics.dna.map.PositionHDF5List

net.maizegenetics.dna.map.net.maizegenetics.dna.map.PositionList

net.maizegenetics.dna.map.net.maizegenetics.dna.map.PositionListBuilder

net.maizegenetics.dna.map.net.maizegenetics.dna.map.PositionListIOUtils

net.maizegenetics.dna.map.net.maizegenetics.dna.map.PositionListTableReport

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TOPMInterface

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TOPMTableReport

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TOPMUtils

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagGWASMap

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagGWASMapInfo

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagGeneticMappingInfo

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagLocus

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagMappingInfo

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagMappingInfoV3

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagsOnGeneticMap

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagsOnPhysMapHDF5

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagsOnPhysicalMap

net.maizegenetics.dna.map.net.maizegenetics.dna.map.TagsOnPhysicalMapV3

net.maizegenetics.dna.map.net.maizegenetics.dna.map.UpdateTOPMWithGeneticMapping

net.maizegenetics.dna.map.net.maizegenetics.dna.map.package-info

net.maizegenetics.dna

net.maizegenetics.dna.net.maizegenetics.dna.package-info

net.maizegenetics.dna.pd

net.maizegenetics.dna.pd.net.maizegenetics.dna.pd.FolderParser

net.maizegenetics.dna.pd.net.maizegenetics.dna.pd.PDAnnotation

net.maizegenetics.dna.pd.net.maizegenetics.dna.pd.PDReport

net.maizegenetics.dna.pd.net.maizegenetics.dna.pd.SiteAnnotation

net.maizegenetics.dna.pd.net.maizegenetics.dna.pd.package-info

net.maizegenetics.dna.read

net.maizegenetics.dna.read.net.maizegenetics.dna.read.FastqChunk

net.maizegenetics.dna.read.net.maizegenetics.dna.read.PEFastqChunk

net.maizegenetics.dna.read.net.maizegenetics.dna.read.PERead

net.maizegenetics.dna.read.net.maizegenetics.dna.read.Read

net.maizegenetics.dna.read.net.maizegenetics.dna.read.ReadUtils

net.maizegenetics.dna.read.net.maizegenetics.dna.read.package-info

net.maizegenetics.dna.snp

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.AbstractMaskMatrix

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.Allele

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.CombineGenotypeTable

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.CoreGenotypeTable

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.ExportUtils

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.Filter

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.FilterAndMaskGVCFGenomeSequence

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.FilterGenotypeTable

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.FilterList

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.FilterSite

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.FilterTableReport

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.FilterTaxa

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.GenotypeTable

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.GenotypeTableBuilder

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.GenotypeTableUtils

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.HapMapHDF5Constants

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.ImportUtils

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.MaskGenotypeMatrix

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.MaskGenotypeStatsMatrix

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.MaskMatrix

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.MaskMatrixBuilder

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.MaskSiteMatrix

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.MaskTaxaMatrix

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.MergedGenotypeTable

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.NucleotideAlignmentConstants

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.ProjectionBuilder

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.ReadSequenceAlignmentUtils

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.SimpleAllele

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.TOPMGenotypeTable

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.Translate

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net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.TranslateIndex

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.TranslateIndexBuilder

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.TranslateIndexRange

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.TranslateIndexRedirect

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.TranslateIndexRedirectUnordered

net.maizegenetics.dna.snp.net.maizegenetics.dna.snp.TranslateNegative

net.maizegenetics.dna.snp.bit

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net.maizegenetics.dna.snp.bit.net.maizegenetics.dna.snp.bit.DynamicBitStorage

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net.maizegenetics.dna.snp.byte2d

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net.maizegenetics.dna.snp.byte2d.net.maizegenetics.dna.snp.byte2d.MemoryByte2D

net.maizegenetics.dna.snp.genotypecall

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net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.AlleleFreqCache

net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.BasicGenotypeMergeRule

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net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.CombineGenotypeCallTable

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net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.GenotypeCallTable

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net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.HDF5ByteGenotypeCallTable

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net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.LineIndexHapmapGenotypeCallTable

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net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.ListStatsFilterTaxa

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net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.MergedGenotypeCallTable

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net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.ProjectionGenotypeCallTable

net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.SetToNGenotypeMergeRule

net.maizegenetics.dna.snp.genotypecall.net.maizegenetics.dna.snp.genotypecall.Stats

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net.maizegenetics.dna.snp.io

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net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.BuilderFromHapMap

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.BuilderFromHapMapLIX

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.BuilderFromPLINK

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.BuilderFromVCF

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.BuilderFromVCFUsingHTSJDK

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.FilterJSONUtils

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net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.JSONUtils

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.LineIndex

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net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.ProjectionGenotypeIO

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.ReadBedfile

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.ReadNumericMarkerUtils

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.SiteScoresIO

net.maizegenetics.dna.snp.io.net.maizegenetics.dna.snp.io.VCFUtil

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net.maizegenetics.dna.snp

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net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.AlleleDepthBuilder

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.AlleleDepthUtil

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.AlleleProbability

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.AlleleProbabilityBuilder

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.Dosage

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.DosageBuilder

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.FilterAlleleDepth

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net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.FilterDosage

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.FilterHDF5AlleleDepth

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net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.HDF5AlleleDepth

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.HDF5AlleleDepthBuilder

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.MaskAlleleDepth

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.MaskAlleleProbability

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.MaskDosage

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.MaskReferenceProbability

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.ReferenceProbability

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.ReferenceProbabilityBuilder

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.SiteScore

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.SiteScoreUtil

net.maizegenetics.dna.snp.score.net.maizegenetics.dna.snp.score.package-info

net.maizegenetics.dna.tag

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net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.AbstractTags

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.AbstractTagsByTaxa

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.AbstractTagsHDF5

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.FastqReader

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.GBSHDF5Constants

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.PETagCounts

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.PETags

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.Reads

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.ReadsByTaxa

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.RepGenData

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.RepGenDataWriter

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.RepGenSQLite

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.RepGenSchema.sql

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.SAMUtils

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.Tag

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagBuilder

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagCountMutable

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net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagData

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagDataSQLite

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagDataWriter

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagSchema.sql

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.Tags

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagsByTaxa

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagsByTaxaByte

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagsByTaxaByteFileMap

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagsByTaxaByteFileMapSeq

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagsByTaxaByteHDF5TagGroups

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagsByTaxaByteHDF5TaxaGroups

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagsByTaxaShort

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TagsByTaxaUtils

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TaxaDistBuilder

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.TaxaDistribution

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.UTagCountMutable

net.maizegenetics.dna.tag.net.maizegenetics.dna.tag.UTagPairs

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net.maizegenetics.gui

net.maizegenetics.gui.net.maizegenetics.gui.AbstractAvailableListModel

net.maizegenetics.gui.net.maizegenetics.gui.AbstractGenotypeTableMask

net.maizegenetics.gui.net.maizegenetics.gui.AlignmentTableCellRenderer

net.maizegenetics.gui.net.maizegenetics.gui.AlignmentTableModel

net.maizegenetics.gui.net.maizegenetics.gui.DialogUtils

net.maizegenetics.gui.net.maizegenetics.gui.FileBrowserUtils

net.maizegenetics.gui.net.maizegenetics.gui.GenotypeTableMask

net.maizegenetics.gui.net.maizegenetics.gui.GenotypeTableMaskBoolean

net.maizegenetics.gui.net.maizegenetics.gui.GenotypeTableMaskGeneticDistance

net.maizegenetics.gui.net.maizegenetics.gui.GenotypeTableMaskReference

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net.maizegenetics.gui.net.maizegenetics.gui.PrintHeapAction

net.maizegenetics.gui.net.maizegenetics.gui.PrintTextArea

net.maizegenetics.gui.net.maizegenetics.gui.ReportDestinationDialog

net.maizegenetics.gui.net.maizegenetics.gui.RowHeaderRenderer

net.maizegenetics.gui.net.maizegenetics.gui.SelectFromAvailableDialog

net.maizegenetics.gui.net.maizegenetics.gui.SelectFromAvailableSitesDialog

net.maizegenetics.gui.net.maizegenetics.gui.SiteNamesAvailableListModel

net.maizegenetics.gui.net.maizegenetics.gui.TOPMGenotypeTableCellRenderer

net.maizegenetics.gui.net.maizegenetics.gui.TableReportNoPagingTableModel

net.maizegenetics.gui.net.maizegenetics.gui.TableRowHeaderListModel

net.maizegenetics.gui.net.maizegenetics.gui.TaxaAvailableListModel

net.maizegenetics.gui.net.maizegenetics.gui.VerticalLabelUI

net.maizegenetics.gui.net.maizegenetics.gui.package-info

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net.maizegenetics.matrixalgebra.Matrix.net.maizegenetics.matrixalgebra.Matrix.EJMLDoubleMatrix

net.maizegenetics.matrixalgebra.Matrix.net.maizegenetics.matrixalgebra.Matrix.package-info

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net.maizegenetics.matrixalgebra.decomposition.net.maizegenetics.matrixalgebra.decomposition.ColtSingularValueDecomposition

net.maizegenetics.matrixalgebra.decomposition.net.maizegenetics.matrixalgebra.decomposition.EJMLEigenvalueDecomposition

net.maizegenetics.matrixalgebra.decomposition.net.maizegenetics.matrixalgebra.decomposition.EJMLSingularValueDecomposition

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net.maizegenetics.matrixalgebra.decomposition.net.maizegenetics.matrixalgebra.decomposition.SingularValueDecomposition

net.maizegenetics.matrixalgebra.decomposition.net.maizegenetics.matrixalgebra.decomposition.SymmetricEigenvalueDecomposition

net.maizegenetics.matrixalgebra.decomposition.net.maizegenetics.matrixalgebra.decomposition.package-info

net.maizegenetics.matrixalgebra.jni

net.maizegenetics.matrixalgebra.jni.net.maizegenetics.matrixalgebra.jni.net_maizegenetics_matrixalgebra_Matrix_BlasDoubleMatrix.c

net.maizegenetics.matrixalgebra.jni.net.maizegenetics.matrixalgebra.jni.net_maizegenetics_matrixalgebra_Matrix_BlasDoubleMatrix.h

net.maizegenetics.matrixalgebra.jni.net.maizegenetics.matrixalgebra.jni.package-info

net.maizegenetics.phenotype

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net.maizegenetics.phenotype.net.maizegenetics.phenotype.FilterPhenotype

net.maizegenetics.phenotype.net.maizegenetics.phenotype.GenotypePhenotype

net.maizegenetics.phenotype.net.maizegenetics.phenotype.GenotypePhenotypeBuilder

net.maizegenetics.phenotype.net.maizegenetics.phenotype.NumericAttribute

net.maizegenetics.phenotype.net.maizegenetics.phenotype.Phenotype

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net.maizegenetics.phenotype.net.maizegenetics.phenotype.PhenotypeBuilder

net.maizegenetics.phenotype.net.maizegenetics.phenotype.PhenotypeUtils

net.maizegenetics.phenotype.net.maizegenetics.phenotype.TaxaAttribute

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net.maizegenetics.pipeline

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net.maizegenetics.pipeline.net.maizegenetics.pipeline.TasselPipelineXMLUtil

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net.maizegenetics.plugindef

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net.maizegenetics.stats.linearmodels.net.maizegenetics.stats.linearmodels.PartitionedLinearModel

net.maizegenetics.stats.linearmodels.net.maizegenetics.stats.linearmodels.SolveByOrthogonalizing

net.maizegenetics.stats.linearmodels.net.maizegenetics.stats.linearmodels.SweepFast

net.maizegenetics.stats.linearmodels.net.maizegenetics.stats.linearmodels.SweepFastLinearModel

net.maizegenetics.stats.linearmodels.net.maizegenetics.stats.linearmodels.SweepFastNestedModel

net.maizegenetics.stats.linearmodels.net.maizegenetics.stats.linearmodels.SymmetricMatrixInverterDM

net.maizegenetics.stats.linearmodels.net.maizegenetics.stats.linearmodels.WithinPopulationPermuter

net.maizegenetics.stats.linearmodels.net.maizegenetics.stats.linearmodels.package-info

net.maizegenetics.stats.math

net.maizegenetics.stats.math.net.maizegenetics.stats.math.ErrorFunction

net.maizegenetics.stats.math.net.maizegenetics.stats.math.GammaFunction

net.maizegenetics.stats.math.net.maizegenetics.stats.math.MersenneTwisterFast

net.maizegenetics.stats.math.net.maizegenetics.stats.math.OrderEnumerator

net.maizegenetics.stats.math.net.maizegenetics.stats.math.OrthogonalHints

net.maizegenetics.stats.math.net.maizegenetics.stats.math.package.html

net.maizegenetics.stats.statistics

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.ApproxFastChiSquareDistribution

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.ChiSquareDistribution

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.ChiSquareTest

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.ContigencyTable

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.ExponentialDistribution

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.FisherExact

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.GammaDistribution

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.LikelihoodRatioTest

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.NormalDistribution

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.ParetoDistribution

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.PenalizedLikelihood

net.maizegenetics.stats.statistics.net.maizegenetics.stats.statistics.package.html

net.maizegenetics.tassel

net.maizegenetics.tassel.net.maizegenetics.tassel.AboutBox

net.maizegenetics.tassel.net.maizegenetics.tassel.Construction.gif

net.maizegenetics.tassel.net.maizegenetics.tassel.DataTreePanel

net.maizegenetics.tassel.net.maizegenetics.tassel.HelpDialog

net.maizegenetics.tassel.net.maizegenetics.tassel.Home.html

net.maizegenetics.tassel.net.maizegenetics.tassel.Logo_small.png

net.maizegenetics.tassel.net.maizegenetics.tassel.PreferencesDialog

net.maizegenetics.tassel.net.maizegenetics.tassel.SeqViewerPanel

net.maizegenetics.tassel.net.maizegenetics.tassel.ShowParameterCachePlugin

net.maizegenetics.tassel.net.maizegenetics.tassel.TASSELMainApp

net.maizegenetics.tassel.net.maizegenetics.tassel.TASSELMainFrame

net.maizegenetics.tassel.net.maizegenetics.tassel.TableReportPanel

net.maizegenetics.tassel.net.maizegenetics.tassel.TasselLogging

net.maizegenetics.tassel.net.maizegenetics.tassel.left.gif

net.maizegenetics.tassel.net.maizegenetics.tassel.package-info

net.maizegenetics.tassel.net.maizegenetics.tassel.right.gif

net.maizegenetics.taxa

net.maizegenetics.taxa.net.maizegenetics.taxa.IdentifierSynonymizer

net.maizegenetics.taxa.net.maizegenetics.taxa.TaxaArrayList

net.maizegenetics.taxa.net.maizegenetics.taxa.TaxaList

net.maizegenetics.taxa.net.maizegenetics.taxa.TaxaListBuilder

net.maizegenetics.taxa.net.maizegenetics.taxa.TaxaListIOUtils

net.maizegenetics.taxa.net.maizegenetics.taxa.TaxaListTableReport

net.maizegenetics.taxa.net.maizegenetics.taxa.TaxaListUtils

net.maizegenetics.taxa.net.maizegenetics.taxa.TaxaTissueDist

net.maizegenetics.taxa.net.maizegenetics.taxa.Taxon

net.maizegenetics.taxa.distance

net.maizegenetics.taxa.distance.net.maizegenetics.taxa.distance.DistanceMatrix

net.maizegenetics.taxa.distance.net.maizegenetics.taxa.distance.DistanceMatrixBuilder

net.maizegenetics.taxa.distance.net.maizegenetics.taxa.distance.DistanceMatrixUtils

net.maizegenetics.taxa.distance.net.maizegenetics.taxa.distance.DistanceMatrixWithCounts

net.maizegenetics.taxa.distance.net.maizegenetics.taxa.distance.ReadDistanceMatrix

net.maizegenetics.taxa.distance.net.maizegenetics.taxa.distance.WriteDistanceMatrix

net.maizegenetics.taxa.distance.net.maizegenetics.taxa.distance.package.html

net.maizegenetics.taxa

net.maizegenetics.taxa.net.maizegenetics.taxa.package-info

net.maizegenetics.taxa.tree

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.AttributeNode

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.BranchLimits

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.CladeSystem

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.LabelMapping

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.MultiParameterized

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.NeighborJoiningTree

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.Node

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.NodeFactory

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.NodeUtils

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.Parameterized

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.RootedTreeUtils

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.SimpleNode

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.SimpleTree

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.SplitSystem

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.SplitUtils

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.Tree

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.TreeClusters

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.TreeParseException

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.TreeUtils

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.UPGMATree

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.Units

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.UnitsProvider

net.maizegenetics.taxa.tree.net.maizegenetics.taxa.tree.package.html

net.maizegenetics.util

net.maizegenetics.util.net.maizegenetics.util.AbstractTableReport

net.maizegenetics.util.net.maizegenetics.util.ArgsEngine

net.maizegenetics.util.net.maizegenetics.util.BasicFileFilter

net.maizegenetics.util.net.maizegenetics.util.BitSet

net.maizegenetics.util.net.maizegenetics.util.BitUtil

net.maizegenetics.util.net.maizegenetics.util.BuilderFromVCFUtil

net.maizegenetics.util.net.maizegenetics.util.ChangeLog.kt

net.maizegenetics.util.net.maizegenetics.util.CheckSum

net.maizegenetics.util.net.maizegenetics.util.ColumnMatrix.kt

net.maizegenetics.util.net.maizegenetics.util.ConvertOldFastqToModernFormatPlugin

net.maizegenetics.util.net.maizegenetics.util.DirectedGraph

net.maizegenetics.util.net.maizegenetics.util.DirectoryCrawler

net.maizegenetics.util.net.maizegenetics.util.DoubleFormat

net.maizegenetics.util.net.maizegenetics.util.ExceptionUtils

net.maizegenetics.util.net.maizegenetics.util.FormattedInput

net.maizegenetics.util.net.maizegenetics.util.FormattedOutput

net.maizegenetics.util.net.maizegenetics.util.GeneralAnnotation

net.maizegenetics.util.net.maizegenetics.util.GeneralAnnotationStorage

net.maizegenetics.util.net.maizegenetics.util.Graph

net.maizegenetics.util.net.maizegenetics.util.GraphBuilder

net.maizegenetics.util.net.maizegenetics.util.GraphUtils

net.maizegenetics.util.net.maizegenetics.util.HDF5TableReport

net.maizegenetics.util.net.maizegenetics.util.HDF5Utils

net.maizegenetics.util.net.maizegenetics.util.InputSource

net.maizegenetics.util.net.maizegenetics.util.LoggingUtils

net.maizegenetics.util.net.maizegenetics.util.MultiMemberGZIPInputStream

net.maizegenetics.util.net.maizegenetics.util.OpenBitSet

net.maizegenetics.util.net.maizegenetics.util.ProgressListener

net.maizegenetics.util.net.maizegenetics.util.SMTPClient

net.maizegenetics.util.net.maizegenetics.util.SimpleTableReport

net.maizegenetics.util.net.maizegenetics.util.Sizeof

net.maizegenetics.util.net.maizegenetics.util.StringNumberComparator

net.maizegenetics.util.net.maizegenetics.util.SuperByteMatrix

net.maizegenetics.util.net.maizegenetics.util.SuperByteMatrixBuilder

net.maizegenetics.util.net.maizegenetics.util.SuperByteMatrixMultiple

net.maizegenetics.util.net.maizegenetics.util.SuperByteMatrixSingle

net.maizegenetics.util.net.maizegenetics.util.SuperByteMatrixSingleValue

net.maizegenetics.util.net.maizegenetics.util.SuperByteMatrixTranspose

net.maizegenetics.util.net.maizegenetics.util.TableReport

net.maizegenetics.util.net.maizegenetics.util.TableReportBuilder

net.maizegenetics.util.net.maizegenetics.util.TableReportUtils

net.maizegenetics.util.net.maizegenetics.util.Tassel5HDF5Constants

net.maizegenetics.util.net.maizegenetics.util.Tuple

net.maizegenetics.util.net.maizegenetics.util.UndirectedGraph

net.maizegenetics.util.net.maizegenetics.util.UnmodifiableBitSet

net.maizegenetics.util.net.maizegenetics.util.Utils

net.maizegenetics.util.db

net.maizegenetics.util.db.net.maizegenetics.util.db.DBTuple

net.maizegenetics.util.db.net.maizegenetics.util.db.DataAccessException

net.maizegenetics.util.db.net.maizegenetics.util.db.DefaultDBTuple

net.maizegenetics.util.db.net.maizegenetics.util.db.LambdaTuplesContext

net.maizegenetics.util.db.net.maizegenetics.util.db.Pair

net.maizegenetics.util.db.net.maizegenetics.util.db.ResultSetIterator

net.maizegenetics.util.db.net.maizegenetics.util.db.ResultSetProcessor

net.maizegenetics.util.db.net.maizegenetics.util.db.SQL

net.maizegenetics.util.db.net.maizegenetics.util.db.SQLAction

net.maizegenetics.util.db.net.maizegenetics.util.db.Transformations

net.maizegenetics.util.db.net.maizegenetics.util.db.TransformerService

net.maizegenetics.util.db.net.maizegenetics.util.db.TypeTransformer

net.maizegenetics.util.db.net.maizegenetics.util.db.package-info

net.maizegenetics.util

net.maizegenetics.util.net.maizegenetics.util.package-info