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TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.

There is a newer version: 5.2.94

/**
 * Data structures involved in genetics, genomes, and the representation of DNA variation.
 * 
 * {@link net.maizegenetics.dna.map} Contains data structures used in recording and organizations physical
 * and genetic {@link map.Position}s across the genome.  Both PositionList and Tags on the physical map are part of
 * this package.
 * 
 * {@link net.maizegenetics.dna.snp} Contains data structures for recording SNP and indel variation across
 * taxa (samples) and genomic positions.
 * 
 * {@link  net.maizegenetics.dna.tag} Contains data structures often used in genotyping-by-sequencing, where
 * contiguous reads of DNA are analyzed together.
 * 
 */
package net.maizegenetics.dna;