net.maizegenetics.dna.read.package-info Maven / Gradle / Ivy
Go to download
Show more of this group Show more artifacts with this name
Show all versions of tassel Show documentation
Show all versions of tassel Show documentation
TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage
disequilibrium.
The newest version!
/**
* Data structures for holding raw sequence data (only Fastq currently), including Illumina, PacBio, Nanapore, etc.
* This package provides methods for quality control, reformatting and contiging pair end sequence.
*
* Definitions:
*
Read: a single sequence from a sequencer
* PERead a paired end sequence, including ReadF and ReadB
* ReadF: a single sequence from paired end sequence of R1
* ReadB: a single sequence from paired end sequence of R2
* Pcontig: a Pcontig is formed by a PE Tag whose forward tag and backward tag have overlap
*
* This package provides methods for quality control, reformatting and contiging pair end sequence.
* All sequences are stored in string. Large chunk of reads do not go into memory
*/
package net.maizegenetics.dna.read;