net.maizegenetics.dna.map.package-info Maven / Gradle / Ivy
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TASSEL 6 is a software package to evaluate traits association. Feature Tables are at the heart of the package where, a feature is a range of positions or a single position. Row in the that table are taxon.
/**
* Supports genetic and physical map representations of genomes including their annotation.
*
* Definitions:
*
* Sites are the list of positions recorded in a genotype table. They are organized into a list.
*
* Positions are any defined point in the genome. Generally they are polymorphic, but they do not need to
* be.
*
* Chromosome can be viewed as physical chromosome, but it can also be used as an order set of positions.
* For example, chromosome
* could be used to reference a large series of contigs.
*
* Annotations are descriptors about a position, e.g. reference allele, minor allele frequency, strand, etc.
*/
package net.maizegenetics.dna.map;