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TASSEL 6 is a software package to evaluate traits association. Feature Tables are at the heart of the package where, a feature is a range of positions or a single position. Row in the that table are taxon.
/**
* Data structures involved in genetics, genomes, and the representation of DNA variation.
*
* {@link net.maizegenetics.dna.map} Contains data structures used in recording and organizations physical
* and genetic {@link map.Position}s across the genome. Both PositionList and Tags on the physical map are part of
* this package.
*
* {@link net.maizegenetics.dna.snp} Contains data structures for recording SNP and indel variation across
* taxa (samples) and genomic positions.
*
* {@link net.maizegenetics.dna.tag} Contains data structures often used in genotyping-by-sequencing, where
* contiguous reads of DNA are analyzed together.
*
*/
package net.maizegenetics.dna;