net.maizegenetics.matrixalgebra.decomposition.SingularValueDecomposition Maven / Gradle / Ivy

Go to download

Show more of this group Show more artifacts with this name
Show all versions of tassel6 Show documentation

TASSEL 6 is a software package to evaluate traits association. Feature Tables are at the heart of the package where, a feature is a range of positions or a single position. Row in the that table are taxon.

There is a newer version: 6.0.1

Show newest version

package net.maizegenetics.matrixalgebra.decomposition;

import net.maizegenetics.matrixalgebra.Matrix.DoubleMatrix;

/**
 * @author Peter Bradbury
 * created 7/22/2010
 */
public interface SingularValueDecomposition {
	/**
	 * for the decomposition of A, A = USV'
	 * @return U (orthogonal)
	 */
	DoubleMatrix getU(boolean transpose);
	
	/**
	 * for the decomposition of A, A = USV'
	 * @return V (orthogonal)
	 */
	DoubleMatrix getV(boolean transpose);
	
	/**
	 * for the decomposition of A, A = USV'
	 * @return S, the diagonal matrix of singular values
	 */
	DoubleMatrix getS();
	
	/**
	 * for the decomposition of A, A = USV'
	 * @return the singular values equal to the diagonal of S
	 */
	double[] getSingularValues();
	
	/**
	 * @return the rank of the matrix that was decomposed
	 */
	int getRank();
}