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TASSEL 6 is a software package to evaluate traits association. Feature Tables are at the heart of the package where, a feature is a range of positions or a single position. Row in the that table are taxon.

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@file:JvmName("ChangeLog")

/*
 *  ChangeLog
 *
 *  Created on Oct 8, 2018
 */
package net.maizegenetics.util

import net.maizegenetics.tassel.TASSELMainApp
import java.io.BufferedReader
import java.util.*
import java.util.concurrent.TimeUnit

/**
 * This outputs the change logs messages in HTML for tassel-5-source since this last
 * "New Build Date" message. The results can be added to Tassel5ChangeHistory.html on
 * the website.
 *
 * @author Terry Casstevens
 */
object ChangeLog {

    private val myLogs = LinkedHashSet()

    @JvmStatic
    fun main(args: Array) {

        setupDebugLogging()

        // 

(V5.2.14) August 27, 2015

//
    try { getLogs().use { reader -> var line: String? = reader?.readLine() val builder = StringBuilder() while (line != null) { line = line.trim { it <= ' ' } if (line.length == 0) { if (builder.length != 0) { builder.append("") if (builder.toString().toLowerCase().equals("
  • new build date
  • ") && !myLogs.isEmpty()) { break } addMessage(builder.toString()) builder.delete(0, builder.length) } } else { if (builder.length != 0) { builder.append(" ") } else { builder.append("
  • ") } builder.append(line) } line = reader?.readLine() } if (builder.length != 0) { builder.append("
  • ") addMessage(builder.toString()) } } } catch (e: Exception) { e.printStackTrace() } print("

    (V") print(TASSELMainApp.version) print(") ") print(TASSELMainApp.versionDate) println("

    ") println("
      ") val itr = myLogs.iterator() while (itr.hasNext()) { println(itr.next()) } println("
    ") } fun getLogs(): BufferedReader? { try { val proc = ProcessBuilder("/bin/sh", "-c", """git log --since='June 1, 2018' --full-history | grep -v -e '^commit ' -e '^Author:' -e '^Date:'""") .redirectOutput(ProcessBuilder.Redirect.PIPE) .redirectError(ProcessBuilder.Redirect.PIPE) .start() proc.waitFor(5, TimeUnit.MINUTES) return proc.inputStream.bufferedReader() } catch (e: Exception) { e.printStackTrace() return null } } private fun addMessage(str: String) { val lowerCase = str.toLowerCase() if (!str.contains("Merge branch") && !str.contains("Merge: ") && !str.contains("Merged in ") && !str.contains("Conflicts: ") && !str.contains("Approved-by: ") && !str.contains("Merge remote-tracking branch") && !lowerCase.contains("removed unused import") && !lowerCase.contains("remove unused import") && !lowerCase.contains("formatting only") && !lowerCase.contains("new build date")) { myLogs.add(str) } } }




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