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org.obolibrary.oboformat.parser.OBOFormatConstants Maven / Gradle / Ivy
package org.obolibrary.oboformat.parser;
import java.text.DateFormat;
import java.text.SimpleDateFormat;
import java.util.HashMap;
import java.util.Map;
import java.util.Set;
import javax.annotation.Nonnull;
/** oboformat constants */
public class OBOFormatConstants {
/** oboformat tags */
public enum OboFormatTag {
//@formatter:off
/**TAG_FORMAT_VERSION*/ TAG_FORMAT_VERSION("format-version"),
/**TAG_ONTOLOGY*/ TAG_ONTOLOGY( "ontology"),
/**TAG_DATA_VERSION*/ TAG_DATA_VERSION( "data-version"),
/**TAG_DATE*/ TAG_DATE( "date"),
/**TAG_SAVED_BY*/ TAG_SAVED_BY( "saved-by"),
/**TAG_AUTO_GENERATED_BY*/ TAG_AUTO_GENERATED_BY( "auto-generated-by"),
/**TAG_IMPORT*/ TAG_IMPORT( "import"),
/**TAG_SUBSETDEF*/ TAG_SUBSETDEF( "subsetdef"),
/**TAG_SYNONYMTYPEDEF*/ TAG_SYNONYMTYPEDEF( "synonymtypedef"),
/**TAG_DEFAULT_NAMESPACE*/ TAG_DEFAULT_NAMESPACE( "default-namespace"),
/**TAG_IDSPACE*/ TAG_IDSPACE( "idspace"),
/**TAG_TREAT_XREFS_AS_EQUIVALENT*/ TAG_TREAT_XREFS_AS_EQUIVALENT( "treat-xrefs-as-equivalent"),
/**TAG_TREAT_XREFS_AS_REVERSE_GENUS_DIFFERENTIA*/ TAG_TREAT_XREFS_AS_REVERSE_GENUS_DIFFERENTIA( "treat-xrefs-as-reverse-genus-differentia"),
/**TAG_TREAT_XREFS_AS_GENUS_DIFFERENTIA*/ TAG_TREAT_XREFS_AS_GENUS_DIFFERENTIA( "treat-xrefs-as-genus-differentia"),
/**TAG_TREAT_XREFS_AS_RELATIONSHIP*/ TAG_TREAT_XREFS_AS_RELATIONSHIP( "treat-xrefs-as-relationship"),
/**TAG_TREAT_XREFS_AS_IS_A*/ TAG_TREAT_XREFS_AS_IS_A( "treat-xrefs-as-is_a"),
/**TAG_TREAT_XREFS_AS_HAS_SUBCLASS*/ TAG_TREAT_XREFS_AS_HAS_SUBCLASS( "treat-xrefs-as-has-subclass"),
/**TAG_OWL_AXIOMS*/ TAG_OWL_AXIOMS( "owl-axioms"),
/**TAG_REMARK*/ TAG_REMARK( "remark"),
/**TAG_ID*/ TAG_ID( "id"),
/**TAG_NAME*/ TAG_NAME( "name"),
/**TAG_NAMESPACE*/ TAG_NAMESPACE( "namespace"),
/**TAG_ALT_ID*/ TAG_ALT_ID( "alt_id"),
/**TAG_DEF*/ TAG_DEF( "def"),
/**TAG_COMMENT*/ TAG_COMMENT( "comment"),
/**TAG_SUBSET*/ TAG_SUBSET( "subset"),
/**TAG_SYNONYM*/ TAG_SYNONYM( "synonym"),
/**TAG_XREF*/ TAG_XREF( "xref"),
/**TAG_BUILTIN*/ TAG_BUILTIN( "builtin"),
/**TAG_PROPERTY_VALUE*/ TAG_PROPERTY_VALUE( "property_value"),
/**TAG_IS_A*/ TAG_IS_A( "is_a"),
/**TAG_INTERSECTION_OF*/ TAG_INTERSECTION_OF( "intersection_of"),
/**TAG_UNION_OF*/ TAG_UNION_OF( "union_of"),
/**TAG_EQUIVALENT_TO*/ TAG_EQUIVALENT_TO( "equivalent_to"),
/**TAG_DISJOINT_FROM*/ TAG_DISJOINT_FROM( "disjoint_from"),
/**TAG_RELATIONSHIP*/ TAG_RELATIONSHIP( "relationship"),
/**TAG_CREATED_BY*/ TAG_CREATED_BY( "created_by"),
/**TAG_CREATION_DATE*/ TAG_CREATION_DATE( "creation_date"),
/**TAG_IS_OBSELETE*/ TAG_IS_OBSELETE( "is_obsolete"),
/**TAG_REPLACED_BY*/ TAG_REPLACED_BY( "replaced_by"),
/**TAG_IS_ANONYMOUS*/ TAG_IS_ANONYMOUS( "is_anonymous"),
/**TAG_DOMAIN*/ TAG_DOMAIN( "domain"),
/**TAG_RANGE*/ TAG_RANGE( "range"),
/**TAG_IS_ANTI_SYMMETRIC*/ TAG_IS_ANTI_SYMMETRIC( "is_anti_symmetric"),
/**TAG_IS_CYCLIC*/ TAG_IS_CYCLIC( "is_cyclic"),
/**TAG_IS_REFLEXIVE*/ TAG_IS_REFLEXIVE( "is_reflexive"),
/**TAG_IS_SYMMETRIC*/ TAG_IS_SYMMETRIC( "is_symmetric"),
/**TAG_IS_TRANSITIVE*/ TAG_IS_TRANSITIVE( "is_transitive"),
/**TAG_IS_FUNCTIONAL*/ TAG_IS_FUNCTIONAL( "is_functional"),
/**TAG_IS_INVERSE_FUNCTIONAL*/ TAG_IS_INVERSE_FUNCTIONAL( "is_inverse_functional"),
/**TAG_TRANSITIVE_OVER*/ TAG_TRANSITIVE_OVER( "transitive_over"),
/**TAG_HOLDS_OVER_CHAIN*/ TAG_HOLDS_OVER_CHAIN( "holds_over_chain"),
/**TAG_EQUIVALENT_TO_CHAIN*/ TAG_EQUIVALENT_TO_CHAIN( "equivalent_to_chain"),
/**TAG_DISJOINT_OVER*/ TAG_DISJOINT_OVER( "disjoint_over"),
/**TAG_EXPAND_ASSERTION_TO*/ TAG_EXPAND_ASSERTION_TO( "expand_assertion_to"),
/**TAG_EXPAND_EXPRESSION_TO*/ TAG_EXPAND_EXPRESSION_TO( "expand_expression_to"),
/**TAG_IS_CLASS_LEVEL_TAG*/ TAG_IS_CLASS_LEVEL_TAG( "is_class_level"),
/**TAG_IS_METADATA_TAG*/ TAG_IS_METADATA_TAG("is_metadata_tag"),
/**TAG_CONSIDER*/ TAG_CONSIDER("consider"),
/**TAG_INVERSE_OF*/ TAG_INVERSE_OF("inverse_of"),
/**TAG_IS_ASYMMETRIC*/ TAG_IS_ASYMMETRIC("is_asymmetric"),
/**TAG_NAMESPACE_ID_RULE*/ TAG_NAMESPACE_ID_RULE("namespace-id-rule"),
/**TAG_LOGICAL_DEFINITION_VIEW_RELATION*/ TAG_LOGICAL_DEFINITION_VIEW_RELATION("logical-definition-view-relation"),
// these are keywords, not tags, but we keep them here for convenience
/**scope*/
TAG_SCOPE("scope"),
/** implicit, in synonymtypedef*/
TAG_HAS_SYNONYM_TYPE("has_synonym_type"),
/** implicit, in synonym*/
/**broad*/
TAG_BROAD("BROAD"),
/**narrow*/
TAG_NARROW("NARROW"),
/**exact*/
TAG_EXACT("EXACT"),
/**related*/
TAG_RELATED("RELATED");
@Nonnull
private final String tag;
OboFormatTag(@Nonnull String tag) {
this.tag = tag;
}
/** @return tag */@Nonnull
public String getTag() {
return tag;
}
@Override
public String toString() {
return tag;
}
}
private static final Map TAGSTABLE=initTagsTable();
static Map initTagsTable(){
Map tags = new HashMap<>();
for (OboFormatTag tag : OboFormatTag.values()) {
tags.put(tag.getTag(), tag);
}
return tags;
}
/** tags */@Nonnull
public static final Set TAGS=TAGSTABLE.keySet();
/** @param tag
* tag
* @return oboformat tag */
public static OboFormatTag getTag(String tag) {
return TAGSTABLE.get(tag);
}
/** Date format for OboFormatTag.TAG_DATE Use Thread local to ensure thread
* safety, as {@link SimpleDateFormat} is not thread safe.
* @deprecated use headerDateFormat() - ThreadLocal do not work nicely with web applications*/
@Deprecated
public static final ThreadLocal headerDateFormat = new ThreadLocal() {
@Nonnull
@Override
protected DateFormat initialValue() {
return new SimpleDateFormat("dd:MM:yyyy HH:mm");
}
};
/** @return Date format for OboFormatTag.TAG_DATE*/
public static final DateFormat headerDateFormat() {
return new SimpleDateFormat("dd:MM:yyyy HH:mm");
}
/** UTF-8 default encoding */
public static final String DEFAULT_CHARACTER_ENCODING = "UTF-8";
}
