org.semanticweb.owlapitools.decomposition.Decomposer Maven / Gradle / Ivy
package org.semanticweb.owlapitools.decomposition;
import static org.semanticweb.owlapi.util.OWLAPIPreconditions.verifyNotNull;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashSet;
import java.util.List;
import java.util.Optional;
import java.util.Set;
import java.util.stream.Stream;
import javax.annotation.Nullable;
import org.semanticweb.owlapi.model.OWLAxiom;
import org.semanticweb.owlapi.model.OWLEntity;
import uk.ac.manchester.cs.owlapi.modularity.ModuleType;
/**
* atomical decomposer of the ontology
*/
public class Decomposer {
/**
* atomic structure to build
*/
@Nullable
private AtomList atomList = null;
/**
* modularizer to build modules
*/
private Modularizer modularizer;
/**
* tautologies of the ontology
*/
private List tautologies = new ArrayList<>();
/**
* fake atom that represents the whole ontology
*/
@Nullable
private OntologyAtom rootAtom = null;
/**
* module type for current AOS creation
*/
private ModuleType type;
private List axioms;
/**
* @param axioms axiom wrappers to decompose
* @param c locality checker to use
*/
public Decomposer(List axioms, LocalityChecker c) {
this.axioms = axioms;
modularizer = buildModulariser(axioms, c);
}
/**
* @param axioms axioms
* @param c locality checker
* @return new modularizer
*/
public static Modularizer buildModulariser(List axioms, LocalityChecker c) {
Modularizer m = new Modularizer(c);
m.preprocessOntology(axioms);
return m;
}
/**
* @return the modularizer for this decomposer
*/
public Modularizer getModularizer() {
return modularizer;
}
/**
* restore all tautologies back
*/
private void restoreTautologies() {
for (AxiomWrapper p : tautologies) {
p.setUsed(true);
}
}
/**
* remove tautologies (axioms that are always local) from the ontology
* temporarily
*/
private void removeTautologies() {
// we might use it for another decomposition
tautologies.clear();
for (AxiomWrapper p : axioms) {
if (p.isUsed()) {
// check whether an axiom is local wrt its own signature
modularizer.extract(p, new Signature(p.getAxiom().signature()), type);
if (modularizer.isTautology(p.getAxiom(), type)) {
tautologies.add(p);
p.setUsed(false);
}
}
}
}
/**
* @return all tautologies wrapped
*/
public List getTautologies() {
return tautologies;
}
/**
* @param sig signature
* @param parent parent atom
* @return module for given axiom AX; use parent atom's module as a base for the module search
*/
private Optional buildModule(Signature sig, OntologyAtom parent) {
// build a module for a given signature
modularizer.extract(parent.getModule(), sig, type);
Collection module = modularizer.getModule();
// if module is empty (empty bottom atom) -- do nothing
if (module.isEmpty()) {
return Optional.empty();
}
// check if the module corresponds to a PARENT one; modules are the same
// iff their sizes are the same
if (parent != rootAtom && module.size() == parent.getModule().size()) {
return Optional.of(parent);
}
// create new atom with that module
assert atomList != null;
OntologyAtom atom = atomList.newAtom();
atom.setModule(module);
return Optional.of(atom);
}
/**
* @param ax axiom
* @param parent parent atom
* @return create atom for given axiom AX; use parent atom's module as a base for the module
* search
*/
private OntologyAtom createAtom(AxiomWrapper ax, OntologyAtom parent) {
// check whether axiom already has an atom
Optional atom = ax.getAtom();
if (atom.isPresent()) {
return atom.get();
}
// build an atom: use a module to find atomic dependencies
atom = buildModule(new Signature(ax.getAxiom().signature()), parent);
// no empty modules should be here
assert atom.isPresent();
// register axiom as a part of an atom
atom.get().addAxiom(ax);
// if atom is the same as parent -- nothing more to do
if (atom.get() == parent) {
return parent;
}
// not the same as parent: for all atom's axioms check their atoms and
// make ATOM depend on them
/** do cycle via set to keep the order */
for (AxiomWrapper q : atom.get().getModule()) {
// #endif
if (!q.equals(ax)) {
atom.get().addDepAtom(createAtom(q, atom.get()));
}
}
return atom.get();
}
/**
* @return atom list class
*/
public AtomList getAOS() {
return verifyNotNull(atomList);
}
/**
* @param t module type
* @return the atomic structure for given module type T
*/
public AtomList getAOS(ModuleType t) {
// remember the type of the module
type = t;
// prepare a new AO structure
atomList = new AtomList();
// init semantic locality checker
modularizer.preprocessOntology(axioms);
// we don't need tautologies here
removeTautologies();
// init the root atom
rootAtom = new OntologyAtom();
rootAtom.setModule(new HashSet<>(axioms));
// build the "bottom" atom for an empty signature
assert rootAtom != null;
Optional bottomAtom = buildModule(new Signature(), rootAtom);
if (bottomAtom.isPresent()) {
bottomAtom.get().addAxioms(bottomAtom.get().getModule());
}
// create atoms for all the axioms in the ontology
for (AxiomWrapper p : axioms) {
if (p.isUsed() && !p.getAtom().isPresent()) {
assert rootAtom != null;
createAtom(p, rootAtom);
}
}
// restore tautologies in the ontology
restoreTautologies();
rootAtom = null;
// reduce graph
assert atomList != null;
atomList.reduceGraph();
return verifyNotNull(atomList);
}
/**
* @param signature the signature to use
* @param moduletype the module type
* @return a set of axioms that corresponds to the atom with the id INDEX
*/
public Set getNonLocal(Stream signature, ModuleType moduletype) {
// init signature
Signature sig = new Signature(signature);
sig.setLocality(false);
// do check
modularizer.getLocalityChecker().setSignatureValue(sig);
Set result = new HashSet<>();
for (AxiomWrapper p : axioms) {
if (!modularizer.getLocalityChecker().local(p.getAxiom())) {
result.add(p.getAxiom());
}
}
return result;
}
/**
* @param signature the signature to use
* @param moduletype module type
* @param useSemantics true if semantic locality should be used
* @return a set of axioms that corresponds to the atom with the id INDEX
*/
public Collection getModule(Stream signature, boolean useSemantics,
ModuleType moduletype) {
// init signature
Signature sig = new Signature(signature);
sig.setLocality(false);
modularizer.extract(axioms, sig, moduletype);
return modularizer.getModule();
}
}