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org.obolibrary.oboformat.parser.OBOFormatConstants Maven / Gradle / Ivy
package org.obolibrary.oboformat.parser;
import com.google.common.collect.Maps;
import java.text.DateFormat;
import java.text.SimpleDateFormat;
import java.util.Arrays;
import java.util.EnumSet;
import java.util.Map;
import java.util.Set;
import javax.annotation.Nullable;
/**
* OBOformat constants.
*/
public class OBOFormatConstants {
private static final Map TAGSTABLE = Maps
.uniqueIndex(Arrays.asList(OboFormatTag.values()),
OboFormatTag::getTag);
/**
* tags
*/
public static final Set TAGS = TAGSTABLE.keySet();
/**
* @param tag tag
* @return oboformat tag
*/
@Nullable
public static OboFormatTag getTag(String tag) {
return TAGSTABLE.get(tag);
}
/**
* @return Date format for OboFormatTag.TAG_DATE
*/
public static final DateFormat headerDateFormat() {
return new SimpleDateFormat("dd:MM:yyyy HH:mm");
}
/**
* OBOformat tags.
*/
public enum OboFormatTag {
//@formatter:off
/**TAG_FORMAT_VERSION. */ TAG_FORMAT_VERSION("format-version"),
/**TAG_ONTOLOGY. */ TAG_ONTOLOGY( "ontology"),
/**TAG_DATA_VERSION. */ TAG_DATA_VERSION( "data-version"),
/**TAG_DATE. */ TAG_DATE( "date"),
/**TAG_SAVED_BY. */ TAG_SAVED_BY( "saved-by"),
/**TAG_AUTO_GENERATED_BY. */ TAG_AUTO_GENERATED_BY( "auto-generated-by"),
/**TAG_IMPORT. */ TAG_IMPORT( "import"),
/**TAG_SUBSETDEF. */ TAG_SUBSETDEF( "subsetdef"),
/**TAG_SYNONYMTYPEDEF. */ TAG_SYNONYMTYPEDEF( "synonymtypedef"),
/**TAG_DEFAULT_NAMESPACE. */ TAG_DEFAULT_NAMESPACE( "default-namespace"),
/**TAG_IDSPACE. */ TAG_IDSPACE( "idspace"),
/**TAG_TREAT_XREFS_AS_EQUIVALENT. */ TAG_TREAT_XREFS_AS_EQUIVALENT( "treat-xrefs-as-equivalent"),
/**TAG_TREAT_XREFS_AS_REVERSE_GENUS_DIFFERENTIA. */ TAG_TREAT_XREFS_AS_REVERSE_GENUS_DIFFERENTIA( "treat-xrefs-as-reverse-genus-differentia"),
/**TAG_TREAT_XREFS_AS_GENUS_DIFFERENTIA. */ TAG_TREAT_XREFS_AS_GENUS_DIFFERENTIA( "treat-xrefs-as-genus-differentia"),
/**TAG_TREAT_XREFS_AS_RELATIONSHIP. */ TAG_TREAT_XREFS_AS_RELATIONSHIP( "treat-xrefs-as-relationship"),
/**TAG_TREAT_XREFS_AS_IS_A. */ TAG_TREAT_XREFS_AS_IS_A( "treat-xrefs-as-is_a"),
/**TAG_TREAT_XREFS_AS_HAS_SUBCLASS. */ TAG_TREAT_XREFS_AS_HAS_SUBCLASS( "treat-xrefs-as-has-subclass"),
/**TAG_OWL_AXIOMS. */ TAG_OWL_AXIOMS( "owl-axioms"),
/**TAG_REMARK. */ TAG_REMARK( "remark"),
/**TAG_ID. */ TAG_ID( "id"),
/**TAG_NAME. */ TAG_NAME( "name"),
/**TAG_NAMESPACE. */ TAG_NAMESPACE( "namespace"),
/**TAG_ALT_ID. */ TAG_ALT_ID( "alt_id"),
/**TAG_DEF. */ TAG_DEF( "def"),
/**TAG_COMMENT. */ TAG_COMMENT( "comment"),
/**TAG_SUBSET. */ TAG_SUBSET( "subset"),
/**TAG_SYNONYM. */ TAG_SYNONYM( "synonym"),
/**TAG_XREF. */ TAG_XREF( "xref"),
/**TAG_BUILTIN. */ TAG_BUILTIN( "builtin"),
/**TAG_PROPERTY_VALUE. */ TAG_PROPERTY_VALUE( "property_value"),
/**TAG_IS_A. */ TAG_IS_A( "is_a"),
/**TAG_INTERSECTION_OF. */ TAG_INTERSECTION_OF( "intersection_of"),
/**TAG_UNION_OF. */ TAG_UNION_OF( "union_of"),
/**TAG_EQUIVALENT_TO. */ TAG_EQUIVALENT_TO( "equivalent_to"),
/**TAG_DISJOINT_FROM. */ TAG_DISJOINT_FROM( "disjoint_from"),
/**TAG_RELATIONSHIP. */ TAG_RELATIONSHIP( "relationship"),
/**TAG_CREATED_BY. */ TAG_CREATED_BY( "created_by"),
/**TAG_CREATION_DATE. */ TAG_CREATION_DATE( "creation_date"),
/**TAG_IS_OBSELETE. */ TAG_IS_OBSELETE( "is_obsolete"),
/**TAG_REPLACED_BY. */ TAG_REPLACED_BY( "replaced_by"),
/**TAG_IS_ANONYMOUS. */ TAG_IS_ANONYMOUS( "is_anonymous"),
/**TAG_DOMAIN. */ TAG_DOMAIN( "domain"),
/**TAG_RANGE. */ TAG_RANGE( "range"),
/**TAG_IS_ANTI_SYMMETRIC. */ TAG_IS_ANTI_SYMMETRIC( "is_anti_symmetric"),
/**TAG_IS_CYCLIC. */ TAG_IS_CYCLIC( "is_cyclic"),
/**TAG_IS_REFLEXIVE. */ TAG_IS_REFLEXIVE( "is_reflexive"),
/**TAG_IS_SYMMETRIC. */ TAG_IS_SYMMETRIC( "is_symmetric"),
/**TAG_IS_TRANSITIVE. */ TAG_IS_TRANSITIVE( "is_transitive"),
/**TAG_IS_FUNCTIONAL. */ TAG_IS_FUNCTIONAL( "is_functional"),
/**TAG_IS_INVERSE_FUNCTIONAL. */ TAG_IS_INVERSE_FUNCTIONAL( "is_inverse_functional"),
/**TAG_TRANSITIVE_OVER. */ TAG_TRANSITIVE_OVER( "transitive_over"),
/**TAG_HOLDS_OVER_CHAIN. */ TAG_HOLDS_OVER_CHAIN( "holds_over_chain"),
/**TAG_EQUIVALENT_TO_CHAIN. */ TAG_EQUIVALENT_TO_CHAIN( "equivalent_to_chain"),
/**TAG_DISJOINT_OVER. */ TAG_DISJOINT_OVER( "disjoint_over"),
/**TAG_EXPAND_ASSERTION_TO. */ TAG_EXPAND_ASSERTION_TO( "expand_assertion_to"),
/**TAG_EXPAND_EXPRESSION_TO. */ TAG_EXPAND_EXPRESSION_TO( "expand_expression_to"),
/**TAG_IS_CLASS_LEVEL_TAG. */ TAG_IS_CLASS_LEVEL_TAG( "is_class_level"),
/**TAG_IS_METADATA_TAG. */ TAG_IS_METADATA_TAG("is_metadata_tag"),
/**TAG_CONSIDER. */ TAG_CONSIDER("consider"),
/**TAG_INVERSE_OF. */ TAG_INVERSE_OF("inverse_of"),
/**TAG_IS_ASYMMETRIC. */ TAG_IS_ASYMMETRIC("is_asymmetric"),
/**TAG_NAMESPACE_ID_RULE. */ TAG_NAMESPACE_ID_RULE("namespace-id-rule"),
/**TAG_LOGICAL_DEFINITION_VIEW_RELATION. */ TAG_LOGICAL_DEFINITION_VIEW_RELATION("logical-definition-view-relation"),
// these are keywords, not tags, but we keep them here for convenience
/** Scope. */
TAG_SCOPE("scope"),
/** Implicit, in synonymtypedef. */
TAG_HAS_SYNONYM_TYPE("has_synonym_type"),
/** implicit, in synonym. */
/** Broad. */
TAG_BROAD("BROAD"),
/** Narrow. */
TAG_NARROW("NARROW"),
/** Exact. */
TAG_EXACT("EXACT"),
/** Related. */
TAG_RELATED("RELATED");
//@formatter:on
/**
* Term frames.
*/
public static final EnumSet TERM_FRAMES = EnumSet
.of(TAG_INTERSECTION_OF, TAG_UNION_OF,
TAG_EQUIVALENT_TO, TAG_DISJOINT_FROM, TAG_RELATIONSHIP, TAG_IS_A);
/**
* Typedef frames.
*/
public static final EnumSet TYPEDEF_FRAMES = EnumSet
.of(TAG_INTERSECTION_OF, TAG_UNION_OF,
TAG_EQUIVALENT_TO, TAG_DISJOINT_FROM, TAG_INVERSE_OF, TAG_TRANSITIVE_OVER,
TAG_DISJOINT_OVER, TAG_IS_A);
private final String tag;
OboFormatTag(String tag) {
this.tag = tag;
}
/**
* @return tag
*/
public String getTag() {
return tag;
}
@Override
public String toString() {
return tag;
}
}
}
