org.obolibrary.obo2owl.IdTranslator Maven / Gradle / Ivy

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package org.obolibrary.obo2owl;

import java.util.HashMap;
import java.util.Map;

import javax.annotation.Nullable;

import org.semanticweb.owlapi.model.IRI;

/**
 * This class will eventually replace the id to IRI translation in Owl2Obo and OboO2Owl 

 * It is currently in-progress.
 *
 * @author cjm
 */
public class IdTranslator {

    static final String OBO_IRI_PREFIX = "http://purl.obolibrary.org/obo/";
    private final Map idspaceMap = new HashMap<>();

    /**
     * @param iri iri
     * @return string for iri
     */
    @Nullable
    public static String translateIRI(@SuppressWarnings("unused") IRI iri) {
        return null;
    }

    /**
     * True if id starts with a standard URI prefix (http, ftp, https) followed by a ":". Does not
     * check if it actually conforms to URI syntax.
     *
     * @param id id
     * @return boolean
     */
    public static boolean isURI(String id) {
        if (id.startsWith("http:") || id.startsWith("ftp:") || id.startsWith("https:")) {
            return true;
        }
        return false;
    }

    /**
     * @param id id
     * @return string for id
     */
    @Nullable
    public String translateIdToIRIString(String id) {
        if (isURI(id)) {
            return id;
        }
        if (id.contains(":")) {
            // PREFIXED ID
            int p = id.lastIndexOf(':');
            String prefix = id.substring(0, p);
            String localId = id.substring(p + 1);
            if (!localId.isEmpty() && localId.replaceAll("[0-9]", "").isEmpty()) {
                // CANONICAL
                return expandPrefix(prefix) + localId;
            }
        }
        return null;
    }

    /**
     * Expands an OBO prefix such as "GO" to "http://purl.obolibrary.org/obo/GO_". By default a
     * prefix XX maps to http://purl.obolibrary.org/obo/XX_
     *
     * @param prefix prefix
     * @return expanded prefix
     */
    public String expandPrefix(String prefix) {
        if (idspaceMap.containsKey(prefix)) {
            return idspaceMap.get(prefix);
        }
        return OBO_IRI_PREFIX + prefix + '_';
    }
}